miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 109606 0.66 0.996562
Target:  5'- --cGGGgCACGGAaagcaAAUGGCGUgGGCGg -3'
miRNA:   3'- ugaUUCgGUGUCU-----UUGCUGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 104482 0.66 0.996562
Target:  5'- cGCgccGGCCccgcCAGAGuACGACAggGGCGa -3'
miRNA:   3'- -UGau-UCGGu---GUCUU-UGCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 162817 0.66 0.996562
Target:  5'- aGCUAgGGCCGCGGcguuAUGGCGUgcCGGUGc -3'
miRNA:   3'- -UGAU-UCGGUGUCuu--UGCUGUA--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 40740 0.66 0.996562
Target:  5'- ----cGCgGCAGAGuucACGGCcUCGGCa -3'
miRNA:   3'- ugauuCGgUGUCUU---UGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 22750 0.66 0.995961
Target:  5'- uGCUGGGC----GAAGCGAUAgCGGCGg -3'
miRNA:   3'- -UGAUUCGguguCUUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 121917 0.66 0.995961
Target:  5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3'
miRNA:   3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 57889 0.66 0.995961
Target:  5'- -aUGGGCCACgAGGcuCGGCGcUUGGCa -3'
miRNA:   3'- ugAUUCGGUG-UCUuuGCUGU-AGCCGc -5'
24739 3' -50.5 NC_005264.1 + 126908 0.66 0.995961
Target:  5'- ----nGCCcCAGAuGCGGCGUCGGa- -3'
miRNA:   3'- ugauuCGGuGUCUuUGCUGUAGCCgc -5'
24739 3' -50.5 NC_005264.1 + 7882 0.66 0.995961
Target:  5'- ----nGCCcCAGAuGCGGCGUCGGa- -3'
miRNA:   3'- ugauuCGGuGUCUuUGCUGUAGCCgc -5'
24739 3' -50.5 NC_005264.1 + 53096 0.66 0.995961
Target:  5'- uCUAAGCUGguGGAcaaGGCGcUCGGCGa -3'
miRNA:   3'- uGAUUCGGUguCUUug-CUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 130008 0.66 0.995961
Target:  5'- uUUAGGCUACAGAccggAACGGCGccgcaGGCu -3'
miRNA:   3'- uGAUUCGGUGUCU----UUGCUGUag---CCGc -5'
24739 3' -50.5 NC_005264.1 + 2891 0.66 0.995961
Target:  5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3'
miRNA:   3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 151896 0.66 0.995961
Target:  5'- aGCUGuauGUgGCGGAGGgGACggCGGCu -3'
miRNA:   3'- -UGAUu--CGgUGUCUUUgCUGuaGCCGc -5'
24739 3' -50.5 NC_005264.1 + 30504 0.66 0.995961
Target:  5'- aGCgAGGCCAUugcgGGAAGCGGCucUCGcGCa -3'
miRNA:   3'- -UGaUUCGGUG----UCUUUGCUGu-AGC-CGc -5'
24739 3' -50.5 NC_005264.1 + 138855 0.66 0.995561
Target:  5'- uCUAuGCCuucuauguccggauCGGAGACGACcauuucGUCGGCGc -3'
miRNA:   3'- uGAUuCGGu-------------GUCUUUGCUG------UAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 16476 0.66 0.995561
Target:  5'- ---cAGCgCugGGggGCGACGagucacaugcgucauUCGGCGc -3'
miRNA:   3'- ugauUCG-GugUCuuUGCUGU---------------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 4262 0.66 0.995277
Target:  5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3'
miRNA:   3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 127236 0.66 0.995277
Target:  5'- --gGGGaCACGGAGACGcggcCAUCGGCc -3'
miRNA:   3'- ugaUUCgGUGUCUUUGCu---GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 90650 0.66 0.995277
Target:  5'- --aGGGCgCGCGGAGACcGCAUugcUGGCGg -3'
miRNA:   3'- ugaUUCG-GUGUCUUUGcUGUA---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 123289 0.66 0.995277
Target:  5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3'
miRNA:   3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.