miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 144392 0.66 0.999996
Target:  5'- aGGcCCGaCGCGU--UCCGCAUuAAGUu -3'
miRNA:   3'- gCUuGGC-GUGCAuuAGGUGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 98555 0.66 0.999996
Target:  5'- uGGGCCGCGauacuCGgcAcCCGCGUAGccAGCc -3'
miRNA:   3'- gCUUGGCGU-----GCauUaGGUGUAUU--UCG- -5'
24742 3' -45.7 NC_005264.1 + 137850 0.66 0.999996
Target:  5'- uGAGCCGCAgGggGUacggggacaaCCGCAggucucgcgGGAGCg -3'
miRNA:   3'- gCUUGGCGUgCauUA----------GGUGUa--------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 14276 0.66 0.999995
Target:  5'- uCGGGCaCGuCGCGgg--CCACGagGAAGCa -3'
miRNA:   3'- -GCUUG-GC-GUGCauuaGGUGUa-UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 152829 0.66 0.999995
Target:  5'- cCGAACgGCGCGgg--CUACG--GGGCu -3'
miRNA:   3'- -GCUUGgCGUGCauuaGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 2529 0.66 0.999995
Target:  5'- gGGugCGCAgaacaccuuCGUGGUCCACGaucuUGuGGCc -3'
miRNA:   3'- gCUugGCGU---------GCAUUAGGUGU----AUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 88695 0.66 0.999995
Target:  5'- cCGAagcaGCUGCgugGCGUGcaugCCGCAUGAGGa -3'
miRNA:   3'- -GCU----UGGCG---UGCAUua--GGUGUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 103483 0.66 0.999995
Target:  5'- aUGggUCGCguGCGcagucUGAUCCGCGacAGGCu -3'
miRNA:   3'- -GCuuGGCG--UGC-----AUUAGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 95326 0.66 0.999995
Target:  5'- gGGACgUGUcucGCGUGAUCCGaggcaAUGGGGCc -3'
miRNA:   3'- gCUUG-GCG---UGCAUUAGGUg----UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 79394 0.66 0.999995
Target:  5'- aGAACCGCcgcggGCGUGGcgaggCCGCGgcgGAacccAGCg -3'
miRNA:   3'- gCUUGGCG-----UGCAUUa----GGUGUa--UU----UCG- -5'
24742 3' -45.7 NC_005264.1 + 33803 0.66 0.999995
Target:  5'- cCGAACgGCGCGgg--CUACG--GGGCu -3'
miRNA:   3'- -GCUUGgCGUGCauuaGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 129753 0.66 0.999995
Target:  5'- aCGAuaUGCACGaAAUCCGCcccGGGCa -3'
miRNA:   3'- -GCUugGCGUGCaUUAGGUGuauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 147784 0.66 0.999995
Target:  5'- uGGACCGCGCGaacUgCGCGacgGAGGUg -3'
miRNA:   3'- gCUUGGCGUGCauuAgGUGUa--UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 79990 0.66 0.999994
Target:  5'- cCGAugccgGCCGCGCGgaagAGgaggcgcggcacaucUCCGguUGGAGCg -3'
miRNA:   3'- -GCU-----UGGCGUGCa---UU---------------AGGUguAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 39809 0.66 0.999993
Target:  5'- gCGAugcGCgGCACGc-AUCCGCcuagAUGGAGCc -3'
miRNA:   3'- -GCU---UGgCGUGCauUAGGUG----UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 47905 0.66 0.999993
Target:  5'- aGAAUuuaCGCACGUGugcCCGCG--GAGCc -3'
miRNA:   3'- gCUUG---GCGUGCAUua-GGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 25161 0.66 0.999993
Target:  5'- uGAGCgaGgACGUGG-CCACGgAAGGCa -3'
miRNA:   3'- gCUUGg-CgUGCAUUaGGUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 153610 0.66 0.999993
Target:  5'- aCGAAaCGCGCGUGGUagcggcguuUCGCAgAAAGUa -3'
miRNA:   3'- -GCUUgGCGUGCAUUA---------GGUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 41481 0.66 0.999993
Target:  5'- -uGugCGUACGUG---CGCGUAAAGCu -3'
miRNA:   3'- gcUugGCGUGCAUuagGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 82508 0.66 0.999993
Target:  5'- cCGAcCCGCGCGgag-CCAUugucuGGCa -3'
miRNA:   3'- -GCUuGGCGUGCauuaGGUGuauu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.