miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 27848 0.66 0.74793
Target:  5'- cUGUCGCGGCGgcauCCGCCCaaUGCGccGCcGCc -3'
miRNA:   3'- -ACGGCGCUGC----GGCGGGc-ACGU--UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 140092 0.66 0.74793
Target:  5'- cGCCGCuauCGCuuCGCCCa-GCAccggGCAGCa -3'
miRNA:   3'- aCGGCGcu-GCG--GCGGGcaCGU----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 16095 0.66 0.74793
Target:  5'- uUGCCGgGucCGCCGCCCucGUuCGACccuaAGCu -3'
miRNA:   3'- -ACGGCgCu-GCGGCGGG--CAcGUUG----UCG- -5'
24755 5' -60.7 NC_005264.1 + 17694 0.66 0.74793
Target:  5'- gGCCGCGGCG--GCUCGUGuCGGguGUu -3'
miRNA:   3'- aCGGCGCUGCggCGGGCAC-GUUguCG- -5'
24755 5' -60.7 NC_005264.1 + 43334 0.66 0.74793
Target:  5'- cUGCCGCcucggaGCaCGCCC-UGC-GCAGCc -3'
miRNA:   3'- -ACGGCGcug---CG-GCGGGcACGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 136582 0.66 0.74793
Target:  5'- cGCCGCGGaaUCGaCCCGUGgAAgcuggaacCAGCg -3'
miRNA:   3'- aCGGCGCUgcGGC-GGGCACgUU--------GUCG- -5'
24755 5' -60.7 NC_005264.1 + 92992 0.66 0.74793
Target:  5'- cGCCGCaGcACGCgGCC-GUaGCGGgGGCa -3'
miRNA:   3'- aCGGCG-C-UGCGgCGGgCA-CGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 74741 0.66 0.74793
Target:  5'- cGCCGgcCGACGCUguGCCCGacGCGcACuGCu -3'
miRNA:   3'- aCGGC--GCUGCGG--CGGGCa-CGU-UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 125749 0.66 0.74793
Target:  5'- cGCCGUccccgGAacUGCCGCCgCGUcGCuagaAACAGCc -3'
miRNA:   3'- aCGGCG-----CU--GCGGCGG-GCA-CG----UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 122460 0.66 0.74793
Target:  5'- gGCCGCGcccGCGCUGCUC--GCAA-AGCg -3'
miRNA:   3'- aCGGCGC---UGCGGCGGGcaCGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 7929 0.66 0.74793
Target:  5'- cGCgCGCGuccacGCGUCGUCCacgGCcGCGGCg -3'
miRNA:   3'- aCG-GCGC-----UGCGGCGGGca-CGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 142431 0.66 0.74793
Target:  5'- cGCCGCGGCGCgGUcuacuuUCGUGguuGCGGg -3'
miRNA:   3'- aCGGCGCUGCGgCG------GGCACgu-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 6986 0.66 0.74793
Target:  5'- gUGgCGCGGgGuuGUCCcUGCgGGCGGCg -3'
miRNA:   3'- -ACgGCGCUgCggCGGGcACG-UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3433 0.66 0.74793
Target:  5'- gGCCGCGcccGCGCUGCUC--GCAA-AGCg -3'
miRNA:   3'- aCGGCGC---UGCGGCGGGcaCGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 24038 0.66 0.74793
Target:  5'- aGUCGUGACGCaCGUCUcuaugGCGgacACAGCc -3'
miRNA:   3'- aCGGCGCUGCG-GCGGGca---CGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 148571 0.66 0.73856
Target:  5'- gGcCCGCGACG-UGCCCGaggaacGCGcuACAGUa -3'
miRNA:   3'- aC-GGCGCUGCgGCGGGCa-----CGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3067 0.66 0.73856
Target:  5'- cGCUGUcuCGCCGCgaCUG-GCGGCGGCc -3'
miRNA:   3'- aCGGCGcuGCGGCG--GGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 122094 0.66 0.73856
Target:  5'- cGCUGUcuCGCCGCgaCUG-GCGGCGGCc -3'
miRNA:   3'- aCGGCGcuGCGGCG--GGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 56400 0.66 0.73856
Target:  5'- cGCCucCGAaGCCGCUCGUGCAGgAu- -3'
miRNA:   3'- aCGGc-GCUgCGGCGGGCACGUUgUcg -5'
24755 5' -60.7 NC_005264.1 + 79399 0.66 0.73856
Target:  5'- cGCCGCgGGCGUgGCgaG-GCcGCGGCg -3'
miRNA:   3'- aCGGCG-CUGCGgCGggCaCGuUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.