miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 65591 0.65 0.654517
Target:  5'- aGGcCCggCGGCCacaucuuGCUGCUGcGuUCGCGGCu -3'
miRNA:   3'- -CCaGGa-GCCGG-------CGGCGGU-C-AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 43896 0.65 0.651648
Target:  5'- gGGgcgCCggagacgauagcgCGGCCGUCGCCucgacGUCGagGGCc -3'
miRNA:   3'- -CCa--GGa------------GCCGGCGGCGGu----CAGCg-CCG- -5'
24757 5' -63.5 NC_005264.1 + 107208 0.66 0.649734
Target:  5'- aGG-CggCGGCgCGCgcgguuggcauucggCGCCAGcCGCGGCu -3'
miRNA:   3'- -CCaGgaGCCG-GCG---------------GCGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 82162 0.66 0.645906
Target:  5'- aGGUgaCUCaaacuGCCguGCgGCCGGUCGgCGGCg -3'
miRNA:   3'- -CCAg-GAGc----CGG--CGgCGGUCAGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 56813 0.66 0.645906
Target:  5'- uGUCCUgcgcugcgCGGCgGCCcuaGCUAGcggcUCGUGGCu -3'
miRNA:   3'- cCAGGA--------GCCGgCGG---CGGUC----AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127093 0.66 0.645906
Target:  5'- cGUCg-CGGCCGCaGUCGGgcacggGCGGCg -3'
miRNA:   3'- cCAGgaGCCGGCGgCGGUCag----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 157558 0.66 0.645906
Target:  5'- gGGUCa---GCCGCCGCCccgccGUC-CGGCc -3'
miRNA:   3'- -CCAGgagcCGGCGGCGGu----CAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 123611 0.66 0.645906
Target:  5'- cGGgaaCgcaGGCCcuccCCGCCAGcgcCGCGGCg -3'
miRNA:   3'- -CCag-Gag-CCGGc---GGCGGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 38531 0.66 0.645906
Target:  5'- gGGUCa---GCCGCCGCCccgccGUC-CGGCc -3'
miRNA:   3'- -CCAGgagcCGGCGGCGGu----CAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 4584 0.66 0.645906
Target:  5'- cGGgaaCgcaGGCCcuccCCGCCAGcgcCGCGGCg -3'
miRNA:   3'- -CCag-Gag-CCGGc---GGCGGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 55703 0.66 0.645906
Target:  5'- cGUagCUCaGCuCGCCGCCuagacaggAGUCcGCGGCu -3'
miRNA:   3'- cCAg-GAGcCG-GCGGCGG--------UCAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 8066 0.66 0.645906
Target:  5'- cGUCg-CGGCCGCaGUCGGgcacggGCGGCg -3'
miRNA:   3'- cCAGgaGCCGGCGgCGGUCag----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127342 0.66 0.644949
Target:  5'- cGUCCagCGauaccaaGCCGUCGCgauCGGcCGCGGCa -3'
miRNA:   3'- cCAGGa-GC-------CGGCGGCG---GUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 109600 0.66 0.63633
Target:  5'- uGUCUaUGGCCGguCCGCCGcuuUCGCGGa -3'
miRNA:   3'- cCAGGaGCCGGC--GGCGGUc--AGCGCCg -5'
24757 5' -63.5 NC_005264.1 + 59963 0.66 0.63633
Target:  5'- uGUCCgc-GCCGCUcaGCCA--CGCGGCg -3'
miRNA:   3'- cCAGGagcCGGCGG--CGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 126024 0.66 0.63633
Target:  5'- -cUCCUCGG-CGUgGCC---CGCGGCg -3'
miRNA:   3'- ccAGGAGCCgGCGgCGGucaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 121739 0.66 0.63633
Target:  5'- aGUCCagauaGGCCGCC-CCGGcCG-GGCc -3'
miRNA:   3'- cCAGGag---CCGGCGGcGGUCaGCgCCG- -5'
24757 5' -63.5 NC_005264.1 + 52500 0.66 0.63633
Target:  5'- uGGUCUacugaaGGCUGCaCGCC-GUCGaacaGGCu -3'
miRNA:   3'- -CCAGGag----CCGGCG-GCGGuCAGCg---CCG- -5'
24757 5' -63.5 NC_005264.1 + 97279 0.66 0.63633
Target:  5'- cGGUag-UGGCCGCUGCCucgCGCaGCc -3'
miRNA:   3'- -CCAggaGCCGGCGGCGGucaGCGcCG- -5'
24757 5' -63.5 NC_005264.1 + 71808 0.66 0.63633
Target:  5'- -cUCCgcauagCGGCCgaaGCCGCCcgcggGGUCGCGa- -3'
miRNA:   3'- ccAGGa-----GCCGG---CGGCGG-----UCAGCGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.