miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 5' -52.2 NC_005264.1 + 26406 0.66 0.990852
Target:  5'- aGCGCCcaugcucuuccGCCUcAGAcuacgagaccgcGGACGGGCg -3'
miRNA:   3'- gCGCGGcauua------UGGA-UCU------------UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 12277 0.66 0.99073
Target:  5'- aCGaUGCCGUAc--CCUGGcggcAGGGCGGuGCg -3'
miRNA:   3'- -GC-GCGGCAUuauGGAUC----UUCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 100401 0.66 0.99073
Target:  5'- uGCGCCccGUAuuggucgugguuGUGCUgcgaAGAAGcCGGGCc -3'
miRNA:   3'- gCGCGG--CAU------------UAUGGa---UCUUCuGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 120566 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 1539 0.66 0.99073
Target:  5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3'
miRNA:   3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 31173 0.66 0.99073
Target:  5'- aCGUGCCGccaacgGUCUGGc-GGCGGGCa -3'
miRNA:   3'- -GCGCGGCauua--UGGAUCuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 104481 0.66 0.989442
Target:  5'- uCGCGCCGgccccGCC-AGAGuacGACagGGGCg -3'
miRNA:   3'- -GCGCGGCauua-UGGaUCUU---CUG--CCCG- -5'
24758 5' -52.2 NC_005264.1 + 117931 0.66 0.989442
Target:  5'- uGCGCCGgaucucuCCUcccgcccccAGAcgacGACGGGCc -3'
miRNA:   3'- gCGCGGCauuau--GGA---------UCUu---CUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 35531 0.66 0.989442
Target:  5'- gGCGCgGcGAaACCUauaGGGcguAGugGGGCa -3'
miRNA:   3'- gCGCGgCaUUaUGGA---UCU---UCugCCCG- -5'
24758 5' -52.2 NC_005264.1 + 31102 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 119412 0.66 0.989442
Target:  5'- gGUGCUGUAcuUGCaCUcgcGGcuGGCGGGCg -3'
miRNA:   3'- gCGCGGCAUu-AUG-GA---UCuuCUGCCCG- -5'
24758 5' -52.2 NC_005264.1 + 134744 0.66 0.989442
Target:  5'- gGCGCCGgugcgcaaUAAcGCCUGacuuugacGAAGACGGucGCa -3'
miRNA:   3'- gCGCGGC--------AUUaUGGAU--------CUUCUGCC--CG- -5'
24758 5' -52.2 NC_005264.1 + 150129 0.66 0.989442
Target:  5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3'
miRNA:   3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5'
24758 5' -52.2 NC_005264.1 + 58774 0.66 0.989442
Target:  5'- aCGCGCgGUGGUcgGCgcAGAGGAUGucGGCa -3'
miRNA:   3'- -GCGCGgCAUUA--UGgaUCUUCUGC--CCG- -5'
24758 5' -52.2 NC_005264.1 + 52531 0.66 0.989306
Target:  5'- uGCGCCGcguggcagAGUACUgcaucgaUGGAauGGGCGGuGCg -3'
miRNA:   3'- gCGCGGCa-------UUAUGG-------AUCU--UCUGCC-CG- -5'
24758 5' -52.2 NC_005264.1 + 150600 0.66 0.989306
Target:  5'- gGC-CCGUAAUcacaagaccGCUUGGGAGAUcguaccgGGGCu -3'
miRNA:   3'- gCGcGGCAUUA---------UGGAUCUUCUG-------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 64515 0.66 0.989306
Target:  5'- cCGCGCUGUucuGUccgcgccGCCgcGGAGGgGGGUu -3'
miRNA:   3'- -GCGCGGCAu--UA-------UGGauCUUCUgCCCG- -5'
24758 5' -52.2 NC_005264.1 + 3623 0.66 0.988166
Target:  5'- gGCGCUGUGGgcgggguggggguuUCUGGGAGGCgguuugagcuggGGGCg -3'
miRNA:   3'- gCGCGGCAUUau------------GGAUCUUCUG------------CCCG- -5'
24758 5' -52.2 NC_005264.1 + 33891 0.66 0.988017
Target:  5'- gGCGgCGgugGAacuCCUAGAAGACauGGCg -3'
miRNA:   3'- gCGCgGCa--UUau-GGAUCUUCUGc-CCG- -5'
24758 5' -52.2 NC_005264.1 + 36152 0.66 0.988017
Target:  5'- aGCGCUGUGcgAgCUcgGGAAgcgcGACGGGa -3'
miRNA:   3'- gCGCGGCAUuaUgGA--UCUU----CUGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.