miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 651 0.66 0.505224
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30236 0.66 0.505224
Target:  5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3'
miRNA:   3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37422 0.66 0.505224
Target:  5'- cGUA-GCCGGCCGggaCGUUAucgcAgCCGGCc -3'
miRNA:   3'- -CAUgCGGCCGGCa--GCGGUu---UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 9134 0.66 0.505224
Target:  5'- --uUGCCGGgUGUCGCgGAugcuaucgcGCgCGGCa -3'
miRNA:   3'- cauGCGGCCgGCAGCGgUU---------UGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15115 0.66 0.505224
Target:  5'- aGUGCuGCgGGCuCGUCGUgaAGACCgagagCGGCg -3'
miRNA:   3'- -CAUG-CGgCCG-GCAGCGg-UUUGG-----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 3721 0.66 0.505224
Target:  5'- -aGCgGCCGGgCGUUGCCGGuUCUguGGCa -3'
miRNA:   3'- caUG-CGGCCgGCAGCGGUUuGGG--CCG- -5'
24815 5' -59.9 NC_005284.1 + 21424 0.66 0.502213
Target:  5'- -aGCGCCGGCCGacgaacgggcggugUCGUUcgAGGCgUGGUg -3'
miRNA:   3'- caUGCGGCCGGC--------------AGCGG--UUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 44342 0.66 0.495217
Target:  5'- uUGCGCCGcCCGcgUCGCCAAAuUCCGa- -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUU-GGGCcg -5'
24815 5' -59.9 NC_005284.1 + 24106 0.66 0.495217
Target:  5'- -cGCGUCGGCaagaaaGcCGCCGG--CCGGCu -3'
miRNA:   3'- caUGCGGCCGg-----CaGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 28511 0.66 0.485302
Target:  5'- uGUGCGCggCGGCgauuUGgagCGCCuucacgucauACCCGGCa -3'
miRNA:   3'- -CAUGCG--GCCG----GCa--GCGGuu--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 41597 0.66 0.485302
Target:  5'- cGUACGCgcgcgaGGCCG-CGCCGAGUgCGaGCu -3'
miRNA:   3'- -CAUGCGg-----CCGGCaGCGGUUUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 46439 0.66 0.485302
Target:  5'- -aACGaaCCGaucGCCGUCGCCGAAUgccgCCGaGCg -3'
miRNA:   3'- caUGC--GGC---CGGCAGCGGUUUG----GGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 22001 0.66 0.485302
Target:  5'- -cGCGCaGGCCGaCGCa----CCGGCa -3'
miRNA:   3'- caUGCGgCCGGCaGCGguuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36909 0.66 0.485302
Target:  5'- aUGCGCCcGCCGau-CCGGGgCCGGCc -3'
miRNA:   3'- cAUGCGGcCGGCagcGGUUUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 49344 0.66 0.482346
Target:  5'- cGUGCGCgacgaccgaacuauCGGUCGcagcuUCGCCGAGCgCGaGCu -3'
miRNA:   3'- -CAUGCG--------------GCCGGC-----AGCGGUUUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 42273 0.66 0.475482
Target:  5'- uGUGCGCCGGUCGucgaggUCGUCAggAGCUUuucgcgugaGGCg -3'
miRNA:   3'- -CAUGCGGCCGGC------AGCGGU--UUGGG---------CCG- -5'
24815 5' -59.9 NC_005284.1 + 36101 0.66 0.475482
Target:  5'- cUugGUCGcGUCGUCGC--GAUUCGGCg -3'
miRNA:   3'- cAugCGGC-CGGCAGCGguUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45289 0.66 0.475482
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 3701 0.66 0.475482
Target:  5'- --cCGCauuucgauuUGGCCGUCGUCGAGCUCGa- -3'
miRNA:   3'- cauGCG---------GCCGGCAGCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 46351 0.66 0.475482
Target:  5'- cGU-CGCgGGC--UCGCCGGACCaucuCGGCa -3'
miRNA:   3'- -CAuGCGgCCGgcAGCGGUUUGG----GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.