miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 22871 0.66 0.59996
Target:  5'- cGCGCCGgAUCuccggauggucguugAgGCUGAcgauCGCGCGCc -3'
miRNA:   3'- -CGCGGCgUAG---------------UgCGGCUu---GCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 38585 0.66 0.595659
Target:  5'- -gGCCGU-UCG-GCCGAGCGCaCGCGg -3'
miRNA:   3'- cgCGGCGuAGUgCGGCUUGCGcGUGU- -5'
24925 3' -57.9 NC_005284.1 + 12739 0.66 0.595659
Target:  5'- -aGCCGU----CGCCGAACugggcuuuGCGCACAc -3'
miRNA:   3'- cgCGGCGuaguGCGGCUUG--------CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 49226 0.66 0.595659
Target:  5'- cGgGCC-CGUC-CGCCuugacGACGCGCGCc -3'
miRNA:   3'- -CgCGGcGUAGuGCGGc----UUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 12496 0.66 0.595659
Target:  5'- cGCGCUGaccgagAUCcCGCCGuuGCGCGCcgGCGa -3'
miRNA:   3'- -CGCGGCg-----UAGuGCGGCu-UGCGCG--UGU- -5'
24925 3' -57.9 NC_005284.1 + 1620 0.66 0.595659
Target:  5'- uGCG-UGC-UCGCGCuCGacAugGCGCGCAa -3'
miRNA:   3'- -CGCgGCGuAGUGCG-GC--UugCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 18266 0.66 0.595659
Target:  5'- uGCaGCCGCcgC-CGUCGAACGUcCGCc -3'
miRNA:   3'- -CG-CGGCGuaGuGCGGCUUGCGcGUGu -5'
24925 3' -57.9 NC_005284.1 + 22680 0.66 0.591363
Target:  5'- -aGCCGCucgauguacgcauUCGCGagaCGAAUGUGCGCc -3'
miRNA:   3'- cgCGGCGu------------AGUGCg--GCUUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 17077 0.66 0.584929
Target:  5'- cGCGUCgGCgAUCGuCGCCGuguGCGCGUucgGCGu -3'
miRNA:   3'- -CGCGG-CG-UAGU-GCGGCu--UGCGCG---UGU- -5'
24925 3' -57.9 NC_005284.1 + 12039 0.66 0.584929
Target:  5'- uCGCCGaCcUCGCGCgGuuuucGGCGCGUGCGg -3'
miRNA:   3'- cGCGGC-GuAGUGCGgC-----UUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 47454 0.66 0.584929
Target:  5'- uUGUCGCuGUCGCGCauGACGCGCu-- -3'
miRNA:   3'- cGCGGCG-UAGUGCGgcUUGCGCGugu -5'
24925 3' -57.9 NC_005284.1 + 15559 0.66 0.584929
Target:  5'- aCGCCGCG-CuCGgCGAGauaccaguCGCGCACGa -3'
miRNA:   3'- cGCGGCGUaGuGCgGCUU--------GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 16165 0.66 0.580647
Target:  5'- uCGCUGauggggcucggCGCGUCGAugGCGCugGg -3'
miRNA:   3'- cGCGGCgua--------GUGCGGCUugCGCGugU- -5'
24925 3' -57.9 NC_005284.1 + 47288 0.66 0.574237
Target:  5'- -gGCCGUcgC-CGCgUGAucaACGCGCGCGa -3'
miRNA:   3'- cgCGGCGuaGuGCG-GCU---UGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 22918 0.66 0.574237
Target:  5'- uGCGgCGCAgccagUCGgGCUGuucugaucgauuGGCGCGCGCGu -3'
miRNA:   3'- -CGCgGCGU-----AGUgCGGC------------UUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6664 0.66 0.574237
Target:  5'- cGCGCCGgGUUugGCgaCGGcCGgCGUACGg -3'
miRNA:   3'- -CGCGGCgUAGugCG--GCUuGC-GCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6937 0.66 0.574237
Target:  5'- cCGCCGCccuccgagcaCACGaUCGAuCGCGCGCGc -3'
miRNA:   3'- cGCGGCGua--------GUGC-GGCUuGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 16259 0.66 0.574237
Target:  5'- aUGCCGCccaGCGCCaucGACGCGC-CGa -3'
miRNA:   3'- cGCGGCGuagUGCGGc--UUGCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 10353 0.66 0.563591
Target:  5'- cGCGCUGC-UCGCGuuGu-CGCGaaacaGCAg -3'
miRNA:   3'- -CGCGGCGuAGUGCggCuuGCGCg----UGU- -5'
24925 3' -57.9 NC_005284.1 + 11810 0.66 0.563591
Target:  5'- gGCGgaGCAggUCGCGCgCGAGCGCGg--- -3'
miRNA:   3'- -CGCggCGU--AGUGCG-GCUUGCGCgugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.