miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 9667 0.66 0.607001
Target:  5'- gGGCaUGCGAGcGAUGCGCgAAa-GCCu -3'
miRNA:   3'- aCCG-ACGCUU-CUGCGCGgUUagCGGc -5'
24962 5' -57.5 NC_005284.1 + 16030 0.66 0.605916
Target:  5'- gGGC-GCGAcgAGAuccgcauUGCGCCGguaAUCGUCGg -3'
miRNA:   3'- aCCGaCGCU--UCU-------GCGCGGU---UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 19009 0.66 0.596157
Target:  5'- cUGGCgUGUGGucgcuGcAgGCGgCGAUCGCCGa -3'
miRNA:   3'- -ACCG-ACGCUu----C-UgCGCgGUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 33984 0.66 0.596157
Target:  5'- gGGCUGCucgacaGggGGUGCGgCGAggGCCGa -3'
miRNA:   3'- aCCGACG------CuuCUGCGCgGUUagCGGC- -5'
24962 5' -57.5 NC_005284.1 + 21497 0.66 0.592909
Target:  5'- cGGUUGCGGgaugcauggcaagaAGcACGCGCgGcagcAUCGCCc -3'
miRNA:   3'- aCCGACGCU--------------UC-UGCGCGgU----UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 23329 0.66 0.589664
Target:  5'- cGGCacgGCGGucaauugggggcccGGCGCGCCGcagcggcgcacGUCGCCc -3'
miRNA:   3'- aCCGa--CGCUu-------------CUGCGCGGU-----------UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 21814 0.66 0.585343
Target:  5'- cGGUgGCGAcGGCGUGCCcggCGCUu -3'
miRNA:   3'- aCCGaCGCUuCUGCGCGGuuaGCGGc -5'
24962 5' -57.5 NC_005284.1 + 32754 0.66 0.585343
Target:  5'- cGGCaUGCGuguucccgcACGCacGCCGGUCGCCc -3'
miRNA:   3'- aCCG-ACGCuuc------UGCG--CGGUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 36242 0.66 0.584263
Target:  5'- cGGCgGCGGAGugGUuuucccgGUCAGUUGCg- -3'
miRNA:   3'- aCCGaCGCUUCugCG-------CGGUUAGCGgc -5'
24962 5' -57.5 NC_005284.1 + 39702 0.66 0.574566
Target:  5'- cGGauacuCUGCGAGcGCGUGCgccuCAAUCGCCu -3'
miRNA:   3'- aCC-----GACGCUUcUGCGCG----GUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 38657 0.66 0.574566
Target:  5'- cGGCUGCGcgaaaccgaACGuCGCCAccgCGCCa -3'
miRNA:   3'- aCCGACGCuuc------UGC-GCGGUua-GCGGc -5'
24962 5' -57.5 NC_005284.1 + 17362 0.66 0.574566
Target:  5'- cGGCUGCGAuaACGUcccgGCCGGcuaCGUCGg -3'
miRNA:   3'- aCCGACGCUucUGCG----CGGUUa--GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 25288 0.66 0.568122
Target:  5'- aUGGCUaccaaucgcaagaaaGCGAAGuaucCGCGCguGUaCGCCa -3'
miRNA:   3'- -ACCGA---------------CGCUUCu---GCGCGguUA-GCGGc -5'
24962 5' -57.5 NC_005284.1 + 22864 0.66 0.563836
Target:  5'- aGGCgGCGGgaAGG-GCGUCGAgCGCCGc -3'
miRNA:   3'- aCCGaCGCU--UCUgCGCGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 7416 0.66 0.563836
Target:  5'- -cGCUGuCGcgcauGACGCGCUucggGAUCGCUGg -3'
miRNA:   3'- acCGAC-GCuu---CUGCGCGG----UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 38088 0.66 0.563836
Target:  5'- cGGC-GCGucGGACGUcagcggcacGCCGA-CGCCGg -3'
miRNA:   3'- aCCGaCGCu-UCUGCG---------CGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 9074 0.66 0.55316
Target:  5'- cUGGCcGCGAAGAUGUacaGCCG--UGUCGa -3'
miRNA:   3'- -ACCGaCGCUUCUGCG---CGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 14936 0.66 0.55316
Target:  5'- cGGUUGCGAAcgucgauuuGGCGUGaauaaCGcgCGCCGu -3'
miRNA:   3'- aCCGACGCUU---------CUGCGCg----GUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10920 0.66 0.552096
Target:  5'- gGGC-GCGAAuGAUGCgcaggcccgcaugGCCGgccucGUCGCCGg -3'
miRNA:   3'- aCCGaCGCUU-CUGCG-------------CGGU-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10387 0.67 0.531999
Target:  5'- cGGCUGCGcacgaagcaaGAGGCGuCGCgGGcgGCCGa -3'
miRNA:   3'- aCCGACGC----------UUCUGC-GCGgUUagCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.