miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 47057 0.66 0.895691
Target:  5'- -gCGCCgUCCCCGUggaucgggauagccgAGACgCGCGcGAACg -3'
miRNA:   3'- caGCGG-AGGGGCG---------------UUUGaGCGU-CUUG- -5'
25027 5' -56 NC_005336.1 + 45606 0.66 0.893015
Target:  5'- cGUCGuCCggcgacaaCCCCGCAccggcgccGAC-CGCGGAAUc -3'
miRNA:   3'- -CAGC-GGa-------GGGGCGU--------UUGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 36402 0.66 0.893015
Target:  5'- --gGCCUCCCacuccuCGCGAaaggcGCUCGCGaccgcGAGCg -3'
miRNA:   3'- cagCGGAGGG------GCGUU-----UGAGCGU-----CUUG- -5'
25027 5' -56 NC_005336.1 + 32506 0.66 0.893015
Target:  5'- -gCGCCUCgacaUCGUGAAgUCGCGGAGg -3'
miRNA:   3'- caGCGGAGg---GGCGUUUgAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 10651 0.66 0.893015
Target:  5'- aUCGUCUUCCCGUcc-CUCGCcuucgcGAGCg -3'
miRNA:   3'- cAGCGGAGGGGCGuuuGAGCGu-----CUUG- -5'
25027 5' -56 NC_005336.1 + 18594 0.66 0.893015
Target:  5'- -aCGUaCUCCuCCGCGAGCUC-CGGAc- -3'
miRNA:   3'- caGCG-GAGG-GGCGUUUGAGcGUCUug -5'
25027 5' -56 NC_005336.1 + 126017 0.66 0.893015
Target:  5'- cGUgGCCUUCgCGCGAA-UCGUgaAGAGCg -3'
miRNA:   3'- -CAgCGGAGGgGCGUUUgAGCG--UCUUG- -5'
25027 5' -56 NC_005336.1 + 124070 0.66 0.893015
Target:  5'- --gGCCU-CCCGCGGACgccgucgccgcgUCGCuGGACg -3'
miRNA:   3'- cagCGGAgGGGCGUUUG------------AGCGuCUUG- -5'
25027 5' -56 NC_005336.1 + 47376 0.66 0.88616
Target:  5'- -gCGCCUCUccaCCGCAGACccgcCGCAGccGCu -3'
miRNA:   3'- caGCGGAGG---GGCGUUUGa---GCGUCu-UG- -5'
25027 5' -56 NC_005336.1 + 29776 0.66 0.88616
Target:  5'- cUCGCgCaccgCCUgCGCGAACUCGCGGcuGGCa -3'
miRNA:   3'- cAGCG-Ga---GGG-GCGUUUGAGCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 16754 0.66 0.88616
Target:  5'- -gCGCCUUgucgaaguugCUCGCGAGgUCGCGGAcGCg -3'
miRNA:   3'- caGCGGAG----------GGGCGUUUgAGCGUCU-UG- -5'
25027 5' -56 NC_005336.1 + 29779 0.66 0.88616
Target:  5'- -gCGCaccgCCUgCGCGAACUCGCGGcuGGCa -3'
miRNA:   3'- caGCGga--GGG-GCGUUUGAGCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 71322 0.66 0.88616
Target:  5'- -aCGCCUUCCUGCGccuGCUCGU---GCa -3'
miRNA:   3'- caGCGGAGGGGCGUu--UGAGCGucuUG- -5'
25027 5' -56 NC_005336.1 + 109813 0.66 0.88616
Target:  5'- -aCGCCaucgaCCCCGC--GCUCGU-GAACg -3'
miRNA:   3'- caGCGGa----GGGGCGuuUGAGCGuCUUG- -5'
25027 5' -56 NC_005336.1 + 80960 0.66 0.88616
Target:  5'- -gCGCgCagCgCGCAGGCUgCGCAGGGCg -3'
miRNA:   3'- caGCG-GagGgGCGUUUGA-GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 49137 0.66 0.88616
Target:  5'- cGUCGCggUCUCGCc--CUCGguGAGCa -3'
miRNA:   3'- -CAGCGgaGGGGCGuuuGAGCguCUUG- -5'
25027 5' -56 NC_005336.1 + 134383 0.66 0.879074
Target:  5'- -gCGCCacgUgCCCGCGAGCcggcacggcaUCGCGGAGg -3'
miRNA:   3'- caGCGG---AgGGGCGUUUG----------AGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 52014 0.66 0.879074
Target:  5'- uUCGaCCggcggCCCUGCGGugUC-CAGGACc -3'
miRNA:   3'- cAGC-GGa----GGGGCGUUugAGcGUCUUG- -5'
25027 5' -56 NC_005336.1 + 50391 0.66 0.871763
Target:  5'- cGUCuGCCUCgucgCCCGCcGGCUgCGCGGcgGGCg -3'
miRNA:   3'- -CAG-CGGAG----GGGCGuUUGA-GCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 26985 0.66 0.871763
Target:  5'- -cCGCCUCCUCGagguccGCgUCGgAGAGCa -3'
miRNA:   3'- caGCGGAGGGGCguu---UG-AGCgUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.