miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 7348 0.66 0.903934
Target:  5'- uGCCGCGGCa---GCCGCgggCGUGCgaggucGCCCg -3'
miRNA:   3'- -UGGUGUCGguugUGGUG---GUACG------UGGG- -5'
25033 3' -55.7 NC_005336.1 + 30326 0.66 0.903934
Target:  5'- cGCCuggACAGCUAcCACCGCuucgaCAUGCugCg -3'
miRNA:   3'- -UGG---UGUCGGUuGUGGUG-----GUACGugGg -5'
25033 3' -55.7 NC_005336.1 + 109111 0.66 0.903934
Target:  5'- gGCCACGggcucgcguGCCGACACUucgACC-UGCGCa- -3'
miRNA:   3'- -UGGUGU---------CGGUUGUGG---UGGuACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 102920 0.66 0.903934
Target:  5'- uUCAUgauCCuguGCACCAUCAaGCACCCg -3'
miRNA:   3'- uGGUGuc-GGu--UGUGGUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 120136 0.66 0.903934
Target:  5'- cGCgGCGGCUGuACGCgcgcgugguCGCCGaGCACCCu -3'
miRNA:   3'- -UGgUGUCGGU-UGUG---------GUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 96096 0.66 0.903934
Target:  5'- aGCaGCGGCCAGCGCCcgcaacgcgcgGCCucgGCGCguCCa -3'
miRNA:   3'- -UGgUGUCGGUUGUGG-----------UGGua-CGUG--GG- -5'
25033 3' -55.7 NC_005336.1 + 5475 0.66 0.903934
Target:  5'- uUCGCGGCCgcGugGCCGCUGUuCACCa -3'
miRNA:   3'- uGGUGUCGG--UugUGGUGGUAcGUGGg -5'
25033 3' -55.7 NC_005336.1 + 110720 0.66 0.903934
Target:  5'- cGCCGCGaCCGGCGCgguCGCCcuUGuCGCCCu -3'
miRNA:   3'- -UGGUGUcGGUUGUG---GUGGu-AC-GUGGG- -5'
25033 3' -55.7 NC_005336.1 + 69367 0.66 0.903934
Target:  5'- cGCCugGGCguGCcgucuuCCugCcgGCGCUCg -3'
miRNA:   3'- -UGGugUCGguUGu-----GGugGuaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 5316 0.66 0.903934
Target:  5'- aGCgCGCGGCgCAGCagcgaaauuGCCACCAcgccgaGCACCg -3'
miRNA:   3'- -UG-GUGUCG-GUUG---------UGGUGGUa-----CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 15036 0.66 0.903934
Target:  5'- -gCGCGcGCCccgGGCGCCGCgcgaaGUGCGCCUg -3'
miRNA:   3'- ugGUGU-CGG---UUGUGGUGg----UACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 110412 0.66 0.903934
Target:  5'- gGCCGCGGCgGcggcguCGCCGCCGcauaucUGCGCg- -3'
miRNA:   3'- -UGGUGUCGgUu-----GUGGUGGU------ACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 13638 0.66 0.903934
Target:  5'- cAUCugGGCCGcuGCGCCGaggaCGUcGCGCUCu -3'
miRNA:   3'- -UGGugUCGGU--UGUGGUg---GUA-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 119470 0.66 0.903934
Target:  5'- gUgGC-GCCAGCAacgaCGCCGacGCACCCg -3'
miRNA:   3'- uGgUGuCGGUUGUg---GUGGUa-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 28871 0.66 0.903934
Target:  5'- cACCAC-GCCGuGCAUCGCCA-GCAgCg -3'
miRNA:   3'- -UGGUGuCGGU-UGUGGUGGUaCGUgGg -5'
25033 3' -55.7 NC_005336.1 + 71498 0.66 0.903298
Target:  5'- uGCCGCGcgcGCCAGCACgCACgcccgcagcggcuCAUcgcgcGCGCCCc -3'
miRNA:   3'- -UGGUGU---CGGUUGUG-GUG-------------GUA-----CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 47309 0.66 0.902659
Target:  5'- uGCCGCcGCCGguGCGCaCGCCGgagaugaacaucGUGCCCg -3'
miRNA:   3'- -UGGUGuCGGU--UGUG-GUGGUa-----------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 101714 0.66 0.900081
Target:  5'- gACgCugAGCCAcacgcuucgcucgucGCGCUggaGCCGcGCGCCCc -3'
miRNA:   3'- -UG-GugUCGGU---------------UGUGG---UGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 127585 0.66 0.897464
Target:  5'- gGCgCACGGCgCuGCACUACCAcUGCGagUCCu -3'
miRNA:   3'- -UG-GUGUCG-GuUGUGGUGGU-ACGU--GGG- -5'
25033 3' -55.7 NC_005336.1 + 38694 0.66 0.897464
Target:  5'- cGCCGCGGUaCGGCGCCAucCCAgaCGCCg -3'
miRNA:   3'- -UGGUGUCG-GUUGUGGU--GGUacGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.