miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 5' -62.4 NC_005336.1 + 48541 0.66 0.609787
Target:  5'- cCGGGCUGCUcaCGGcCGCGCUCa----- -3'
miRNA:   3'- cGUCCGACGA--GCC-GCGCGAGcgcgac -5'
25033 5' -62.4 NC_005336.1 + 99600 0.66 0.609787
Target:  5'- uGC-GGCgUGCUCaagggccGCGCGCUgCGCGCc- -3'
miRNA:   3'- -CGuCCG-ACGAGc------CGCGCGA-GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 44811 0.66 0.609787
Target:  5'- aGCAcgcGGCgauauacGCggGGCGCGUggaccgCGCGCUGc -3'
miRNA:   3'- -CGU---CCGa------CGagCCGCGCGa-----GCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 3808 0.66 0.609787
Target:  5'- cGCGGccagccGCUGCcCGcGCGCGCccgccgCGCGCa- -3'
miRNA:   3'- -CGUC------CGACGaGC-CGCGCGa-----GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 99837 0.66 0.609787
Target:  5'- aCAGGacauggacCUGCgCGGCGUGUcCGCGCg- -3'
miRNA:   3'- cGUCC--------GACGaGCCGCGCGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 3808 0.66 0.609787
Target:  5'- cGCGGccagccGCUGCcCGcGCGCGCccgccgCGCGCa- -3'
miRNA:   3'- -CGUC------CGACGaGC-CGCGCGa-----GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 15114 0.66 0.609787
Target:  5'- gGCAcuGGCUgGCcgCGGaCG-GCUCGCGCg- -3'
miRNA:   3'- -CGU--CCGA-CGa-GCC-GCgCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 26880 0.66 0.609787
Target:  5'- aGCAGGC-GCUUGGCcacGCGCagcaGCGUc- -3'
miRNA:   3'- -CGUCCGaCGAGCCG---CGCGag--CGCGac -5'
25033 5' -62.4 NC_005336.1 + 53677 0.66 0.609787
Target:  5'- aGCAcccGCUGCgcgUGGUGCGCUuccUGCGCc- -3'
miRNA:   3'- -CGUc--CGACGa--GCCGCGCGA---GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 83302 0.66 0.609787
Target:  5'- aCGGGCcGCUgGGCGCGCgcccCG-GCg- -3'
miRNA:   3'- cGUCCGaCGAgCCGCGCGa---GCgCGac -5'
25033 5' -62.4 NC_005336.1 + 12660 0.66 0.609787
Target:  5'- cGCGGcGCUGCgcCGGgGgGUgUCGCGCg- -3'
miRNA:   3'- -CGUC-CGACGa-GCCgCgCG-AGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 124679 0.66 0.609787
Target:  5'- cGCGGuGCUGCggcccgCGGCGUcgGCggGCGCc- -3'
miRNA:   3'- -CGUC-CGACGa-----GCCGCG--CGagCGCGac -5'
25033 5' -62.4 NC_005336.1 + 41939 0.66 0.608795
Target:  5'- cGUcGaGCUGCgcgUCGGUGCGCUgucgccaCGCGCg- -3'
miRNA:   3'- -CGuC-CGACG---AGCCGCGCGA-------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 12734 0.66 0.603837
Target:  5'- aGCGGGUugccgcgcaugagcaUGUgcagCGGCGCGUaccCGCGCg- -3'
miRNA:   3'- -CGUCCG---------------ACGa---GCCGCGCGa--GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 130332 0.66 0.599873
Target:  5'- aCGGGCgcgaGCcCGGUGCccGCggacgCGCGCUGc -3'
miRNA:   3'- cGUCCGa---CGaGCCGCG--CGa----GCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 75359 0.66 0.599873
Target:  5'- --uGGCUGUUCaGGCGCaC-CGCGCg- -3'
miRNA:   3'- cguCCGACGAG-CCGCGcGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 104683 0.66 0.599873
Target:  5'- cGCGGcGCUGCUa--CGCGCUCuCGCa- -3'
miRNA:   3'- -CGUC-CGACGAgccGCGCGAGcGCGac -5'
25033 5' -62.4 NC_005336.1 + 31488 0.66 0.599873
Target:  5'- gGguGGUUGCggaacUUGaGCGCGUaCGCGCUc -3'
miRNA:   3'- -CguCCGACG-----AGC-CGCGCGaGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 97453 0.66 0.599873
Target:  5'- aGCcGGCaGUUUGaCGUGCUCGUGCUc -3'
miRNA:   3'- -CGuCCGaCGAGCcGCGCGAGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 123184 0.66 0.599873
Target:  5'- cGCGuGUUGgaggCGGaCGCGCgCGCGCUGg -3'
miRNA:   3'- -CGUcCGACga--GCC-GCGCGaGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.