miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 89542 0.66 0.880327
Target:  5'- cGGCUGCC-CGgGuCGAGCgCAGC-UCg -3'
miRNA:   3'- aCUGGCGGuGCgC-GCUCGaGUUGuAG- -5'
25039 3' -56.5 NC_005336.1 + 97513 0.66 0.880327
Target:  5'- cGACuUGCCgGCGUGCGuccGGCggaaaggCGGCAUCg -3'
miRNA:   3'- aCUG-GCGG-UGCGCGC---UCGa------GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 38116 0.66 0.880327
Target:  5'- gGACCGCgG-GCGCGcGCUgGGCGa- -3'
miRNA:   3'- aCUGGCGgUgCGCGCuCGAgUUGUag -5'
25039 3' -56.5 NC_005336.1 + 58320 0.66 0.880327
Target:  5'- aGuACaCGaaGCGCGCGGGCU--GCGUCa -3'
miRNA:   3'- aC-UG-GCggUGCGCGCUCGAguUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 124105 0.66 0.880327
Target:  5'- cGGCCGCCGCaaCGCGuGCgUGACAc- -3'
miRNA:   3'- aCUGGCGGUGc-GCGCuCGaGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 132981 0.66 0.880327
Target:  5'- aGGgCGaCGaGCGCGAGUUCGugGUCu -3'
miRNA:   3'- aCUgGCgGUgCGCGCUCGAGUugUAG- -5'
25039 3' -56.5 NC_005336.1 + 54682 0.66 0.880327
Target:  5'- cGGCUGCCccaucguggUGCGCGAGCUgcugGACAUg -3'
miRNA:   3'- aCUGGCGGu--------GCGCGCUCGAg---UUGUAg -5'
25039 3' -56.5 NC_005336.1 + 34840 0.66 0.880327
Target:  5'- aGGCCGCgC-CGUGCGAGaUCAugcaGUCg -3'
miRNA:   3'- aCUGGCG-GuGCGCGCUCgAGUug--UAG- -5'
25039 3' -56.5 NC_005336.1 + 52639 0.66 0.880327
Target:  5'- aGGCCuaccuccgcgaGCUGCGCgGCGAGCUgCGGCGc- -3'
miRNA:   3'- aCUGG-----------CGGUGCG-CGCUCGA-GUUGUag -5'
25039 3' -56.5 NC_005336.1 + 97807 0.66 0.880327
Target:  5'- cGGCCaugGCCGCGgGCGAGgCgCGGCGc- -3'
miRNA:   3'- aCUGG---CGGUGCgCGCUC-GaGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 36521 0.66 0.880327
Target:  5'- aGACgCGCUugGU--GAGCUCGACGa- -3'
miRNA:   3'- aCUG-GCGGugCGcgCUCGAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 80832 0.66 0.880327
Target:  5'- gGACCGCCcgcgcucuugauGCGCGCguacuugccGAGCUCcuCGa- -3'
miRNA:   3'- aCUGGCGG------------UGCGCG---------CUCGAGuuGUag -5'
25039 3' -56.5 NC_005336.1 + 16397 0.66 0.880327
Target:  5'- aGA-CGCCGCGC-CG-GCUCAgaucgugcacgGCGUCg -3'
miRNA:   3'- aCUgGCGGUGCGcGCuCGAGU-----------UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 47529 0.66 0.880327
Target:  5'- cGuCUGCUGCG-GCGGGUUCGGgAUCu -3'
miRNA:   3'- aCuGGCGGUGCgCGCUCGAGUUgUAG- -5'
25039 3' -56.5 NC_005336.1 + 50968 0.66 0.873092
Target:  5'- cGugCGCCG-GCGCGgcGGC-CGgcGCAUCa -3'
miRNA:   3'- aCugGCGGUgCGCGC--UCGaGU--UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 97876 0.66 0.873092
Target:  5'- -uGCaCGCCGCGCuccGCGAGCgccUCGGCGc- -3'
miRNA:   3'- acUG-GCGGUGCG---CGCUCG---AGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 42237 0.66 0.873092
Target:  5'- cGGCCGCCguggaGCGCGCGcAGCcgcugccCGAaGUCg -3'
miRNA:   3'- aCUGGCGG-----UGCGCGC-UCGa------GUUgUAG- -5'
25039 3' -56.5 NC_005336.1 + 130867 0.66 0.873092
Target:  5'- gGACagaGCC-CGCGUGGGCgagGugGUCa -3'
miRNA:   3'- aCUGg--CGGuGCGCGCUCGag-UugUAG- -5'
25039 3' -56.5 NC_005336.1 + 94428 0.66 0.873092
Target:  5'- aUGcCCGCguuuacCGgGCgGUGAGCUCAAUGUCg -3'
miRNA:   3'- -ACuGGCG------GUgCG-CGCUCGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 12796 0.66 0.873092
Target:  5'- gUGGUCGCCGCGCccGCGGGCgUGACGg- -3'
miRNA:   3'- -ACUGGCGGUGCG--CGCUCGaGUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.