miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 67066 0.66 0.975171
Target:  5'- --cGCCacGGUGaUGCGCAaccugCGCGAGCu -3'
miRNA:   3'- gguUGGa-CUACaGCGCGUa----GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 82803 0.66 0.975171
Target:  5'- -gAGCUcgGcgGUCGCGCG-CGUGAuGCg -3'
miRNA:   3'- ggUUGGa-CuaCAGCGCGUaGCGCU-CG- -5'
25039 5' -53.3 NC_005336.1 + 132069 0.66 0.975171
Target:  5'- aCCGGCCgUGAg--CGCGCugGUCGUGcuggucAGCa -3'
miRNA:   3'- -GGUUGG-ACUacaGCGCG--UAGCGC------UCG- -5'
25039 5' -53.3 NC_005336.1 + 54175 0.66 0.975171
Target:  5'- uCCGGCCcGGgcgcgGUCggcgGCGCcgCGCGAcgGCg -3'
miRNA:   3'- -GGUUGGaCUa----CAG----CGCGuaGCGCU--CG- -5'
25039 5' -53.3 NC_005336.1 + 130612 0.66 0.975171
Target:  5'- gCGA-CUGGUGgagCGCGCGcugCGCGcGCu -3'
miRNA:   3'- gGUUgGACUACa--GCGCGUa--GCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 30587 0.66 0.975171
Target:  5'- gCGGCgCUGGaGUucgCGCGCAcgGCGGGCg -3'
miRNA:   3'- gGUUG-GACUaCA---GCGCGUagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 77693 0.66 0.974911
Target:  5'- gCGGCCuUGGUGcgcUCGCGCAcgUGCGucacgaaGGCg -3'
miRNA:   3'- gGUUGG-ACUAC---AGCGCGUa-GCGC-------UCG- -5'
25039 5' -53.3 NC_005336.1 + 35530 0.66 0.974911
Target:  5'- gCUGAUCUGGuUGUCgGCGacgaaguCGUCGuCGAGCg -3'
miRNA:   3'- -GGUUGGACU-ACAG-CGC-------GUAGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 116036 0.66 0.972484
Target:  5'- gCCGcCCUGGgcggUGuUCGCGCuggCGCuAGCg -3'
miRNA:   3'- -GGUuGGACU----AC-AGCGCGua-GCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 69329 0.66 0.972484
Target:  5'- aCGACCU-----UGCGCuugCGCGGGCa -3'
miRNA:   3'- gGUUGGAcuacaGCGCGua-GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 41842 0.66 0.972484
Target:  5'- gCGGuCCU--UGUCGCGCAgugCGCGcGUg -3'
miRNA:   3'- gGUU-GGAcuACAGCGCGUa--GCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 98179 0.66 0.972484
Target:  5'- gCGGuCCUGggGcUCGCGCAccugCuCGAGCa -3'
miRNA:   3'- gGUU-GGACuaC-AGCGCGUa---GcGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 101196 0.66 0.972484
Target:  5'- aCCAGCgUGA---CGCGCGgcaGCGAGa -3'
miRNA:   3'- -GGUUGgACUacaGCGCGUag-CGCUCg -5'
25039 5' -53.3 NC_005336.1 + 34304 0.66 0.972484
Target:  5'- gCAGCuaCUGcgGU-GCGCGUCGC-AGCc -3'
miRNA:   3'- gGUUG--GACuaCAgCGCGUAGCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 59131 0.66 0.972484
Target:  5'- aCCuuCCUGccgcaagccGUG-CGcCGCggCGCGGGCg -3'
miRNA:   3'- -GGuuGGAC---------UACaGC-GCGuaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 61356 0.66 0.972484
Target:  5'- aCAGCUcGGUGgccgacgCGUGCA-CGuCGAGCa -3'
miRNA:   3'- gGUUGGaCUACa------GCGCGUaGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 45924 0.66 0.972484
Target:  5'- aCCAGCCcguacuUGAgcUCGaGCAggucCGCGAGCu -3'
miRNA:   3'- -GGUUGG------ACUacAGCgCGUa---GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 101727 0.66 0.972484
Target:  5'- gCGGCCgcgGAcGUgGC-CAcCGCGAGCg -3'
miRNA:   3'- gGUUGGa--CUaCAgCGcGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 67932 0.66 0.972204
Target:  5'- aCCuuCUUGGUG-CGCGaggccacCAUCGCGAacaGCa -3'
miRNA:   3'- -GGuuGGACUACaGCGC-------GUAGCGCU---CG- -5'
25039 5' -53.3 NC_005336.1 + 30431 0.66 0.969593
Target:  5'- -uGGCUaggGcgGcCGcCGCGUCGCGGGCc -3'
miRNA:   3'- ggUUGGa--CuaCaGC-GCGUAGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.