miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 102468 0.66 0.891872
Target:  5'- uUCGGCACCGAGGUcGCguaC-CugGGCc -3'
miRNA:   3'- -GGCUGUGGCUCCA-CGagaGcGugCUG- -5'
25041 5' -56.9 NC_005336.1 + 100105 0.66 0.891872
Target:  5'- gCGGCGgCGAGGcGCcCgccgCGCACGuACa -3'
miRNA:   3'- gGCUGUgGCUCCaCGaGa---GCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 129494 0.66 0.891872
Target:  5'- aCGAcCugCGca-UGgUCUCGCACGACg -3'
miRNA:   3'- gGCU-GugGCuccACgAGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 51835 0.66 0.891872
Target:  5'- uCCGACGaCGAGGcGCUCggCGC-CGuGCa -3'
miRNA:   3'- -GGCUGUgGCUCCaCGAGa-GCGuGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 56122 0.66 0.891872
Target:  5'- gCCGACAUCGcGGacaGCg--UGCGCGACc -3'
miRNA:   3'- -GGCUGUGGCuCCa--CGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 103225 0.66 0.891872
Target:  5'- aUCGGCGCCGGcGUGCgcaaGCccGCGACg -3'
miRNA:   3'- -GGCUGUGGCUcCACGagagCG--UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 52170 0.66 0.887865
Target:  5'- cCCG-CGCUGGGGgcaauaucggccacGCUCUCGC-CGGg -3'
miRNA:   3'- -GGCuGUGGCUCCa-------------CGAGAGCGuGCUg -5'
25041 5' -56.9 NC_005336.1 + 22325 0.66 0.885149
Target:  5'- gCCGcCGCCGAGcGcggGCUUUCGCuGCG-Cg -3'
miRNA:   3'- -GGCuGUGGCUC-Ca--CGAGAGCG-UGCuG- -5'
25041 5' -56.9 NC_005336.1 + 117212 0.66 0.885149
Target:  5'- cUCGACGCgGcgcAGGUGC-CggaGCAUGGCg -3'
miRNA:   3'- -GGCUGUGgC---UCCACGaGag-CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 130113 0.66 0.885149
Target:  5'- gCCGcCGCCGAGGagGCcgC-CGcCGCGGCc -3'
miRNA:   3'- -GGCuGUGGCUCCa-CGa-GaGC-GUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 64811 0.66 0.885149
Target:  5'- gCGuCACCGAGGccgaccugGCgCUCGCA-GACc -3'
miRNA:   3'- gGCuGUGGCUCCa-------CGaGAGCGUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 77393 0.66 0.885149
Target:  5'- uCCGGCAgCGGcgcguuaacGUGCUggUGCACGACg -3'
miRNA:   3'- -GGCUGUgGCUc--------CACGAgaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 37803 0.66 0.885149
Target:  5'- uCCGGCGCCGAGaucuucacGUcGUcgaUCUCgaGCACGAUg -3'
miRNA:   3'- -GGCUGUGGCUC--------CA-CG---AGAG--CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 123004 0.66 0.885149
Target:  5'- gCGAUGCUGAaGaUGUUCUCGCA-GACa -3'
miRNA:   3'- gGCUGUGGCUcC-ACGAGAGCGUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 70133 0.66 0.885149
Target:  5'- gCGugACCGAGaaGUUCgcgaGCAUGGCg -3'
miRNA:   3'- gGCugUGGCUCcaCGAGag--CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 120202 0.66 0.882398
Target:  5'- aCGuaACGcCCGAGGaccugcucgaagaGCUCUCGCgGCGGCg -3'
miRNA:   3'- gGC--UGU-GGCUCCa------------CGAGAGCG-UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 103609 0.66 0.878207
Target:  5'- gCGGCGgCGAuGGUGCccggCgaggCGCGCGAg -3'
miRNA:   3'- gGCUGUgGCU-CCACGa---Ga---GCGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 61793 0.66 0.878207
Target:  5'- gCGACcgcgaGCCGGaucuGGUGCUCgcaGgGCGGCg -3'
miRNA:   3'- gGCUG-----UGGCU----CCACGAGag-CgUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13408 0.66 0.878207
Target:  5'- gCCGGCGgCGGGGaugguuaGCUC-CGCGCGcCc -3'
miRNA:   3'- -GGCUGUgGCUCCa------CGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 64437 0.66 0.878207
Target:  5'- aUGGcCACCGcGGUGCUCgagcUCGUcagggACGGCg -3'
miRNA:   3'- gGCU-GUGGCuCCACGAG----AGCG-----UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.