miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 62132 0.66 0.865865
Target:  5'- ----gGAUGCGCGCGCCGuCGaGCUc -3'
miRNA:   3'- aguagCUGCGUGCGUGGCuGCgCGAu -5'
25042 3' -57.1 NC_005336.1 + 123471 0.66 0.865865
Target:  5'- gCggCGAgGCGCGCAa-GACGcCGCUGc -3'
miRNA:   3'- aGuaGCUgCGUGCGUggCUGC-GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 68837 0.66 0.865865
Target:  5'- gCAUCGAcccguaccCGCGCgGCGgcCCGGCGUGCc- -3'
miRNA:   3'- aGUAGCU--------GCGUG-CGU--GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 118672 0.66 0.865865
Target:  5'- gCAgccCGcCGUGCaCGCCGGCGCGCa- -3'
miRNA:   3'- aGUa--GCuGCGUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 49790 0.66 0.865865
Target:  5'- gCAUCGcgaGCGCGCGCuCCGAgaaGCaGCUc -3'
miRNA:   3'- aGUAGC---UGCGUGCGuGGCUg--CG-CGAu -5'
25042 3' -57.1 NC_005336.1 + 109738 0.66 0.865865
Target:  5'- uUCG-CGcucACGUGCGCGCCGuggacggccuGCGCGCa- -3'
miRNA:   3'- -AGUaGC---UGCGUGCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 117135 0.66 0.865865
Target:  5'- cUCA-CGAC-CGCGCGCaCGACGCcgggaacgcagGCUGg -3'
miRNA:   3'- -AGUaGCUGcGUGCGUG-GCUGCG-----------CGAU- -5'
25042 3' -57.1 NC_005336.1 + 29817 0.66 0.865865
Target:  5'- uUCAUCGu--C-CGCGgCGACGCGCUc -3'
miRNA:   3'- -AGUAGCugcGuGCGUgGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 40434 0.66 0.865865
Target:  5'- aCA-CGcaGCGUGCGCG-CGACGCGCa- -3'
miRNA:   3'- aGUaGC--UGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 102587 0.66 0.865865
Target:  5'- -gAUCGA-GCGCGC-CgGGCgGCGCUAc -3'
miRNA:   3'- agUAGCUgCGUGCGuGgCUG-CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 61963 0.66 0.865865
Target:  5'- aCGUgG-UGCACGCGCUG-CGCGUg- -3'
miRNA:   3'- aGUAgCuGCGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 133810 0.66 0.865865
Target:  5'- aCAcgGACGCgACGCugCugGACGUGCUGc -3'
miRNA:   3'- aGUagCUGCG-UGCGugG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 21351 0.66 0.865115
Target:  5'- gUCuUCGACGC-CGUGCucaaggcagccuuCGACGCGCc- -3'
miRNA:   3'- -AGuAGCUGCGuGCGUG-------------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 63746 0.66 0.865115
Target:  5'- aCGUCGACGgcuccgcggccuuCGCGCGCaaGCGCGUg- -3'
miRNA:   3'- aGUAGCUGC-------------GUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 125794 0.66 0.861332
Target:  5'- gCAUCGAgaCGCACGuCGCgGaggggaaccucgaucGCGCGCUc -3'
miRNA:   3'- aGUAGCU--GCGUGC-GUGgC---------------UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 27181 0.66 0.858269
Target:  5'- cUCcgCGAaGCACGCGCCGGgguUGuCGCa- -3'
miRNA:   3'- -AGuaGCUgCGUGCGUGGCU---GC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 68924 0.66 0.858269
Target:  5'- -gGUCGcGCGCACG-ACCGGCaCGCg- -3'
miRNA:   3'- agUAGC-UGCGUGCgUGGCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 74563 0.66 0.858269
Target:  5'- cCGaCGACGCGCGaCAUgGgcACGCGCg- -3'
miRNA:   3'- aGUaGCUGCGUGC-GUGgC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 28781 0.66 0.858269
Target:  5'- --cUCGAC-CACGCGCUG-CGCGUc- -3'
miRNA:   3'- aguAGCUGcGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 95468 0.66 0.858269
Target:  5'- gCAcUCG-UGCGCGCGgCaGACGCGCg- -3'
miRNA:   3'- aGU-AGCuGCGUGCGUgG-CUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.