miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 29973 0.66 0.645345
Target:  5'- --aCGCGCUCGCGGCGCuGC---UCGa -3'
miRNA:   3'- cggGCGCGGGCGCUGCGuCGccaAGC- -5'
25042 5' -62.7 NC_005336.1 + 112648 0.66 0.645345
Target:  5'- uCCCGCGCUucaaCGUGACGCGcuCGGggCu -3'
miRNA:   3'- cGGGCGCGG----GCGCUGCGUc-GCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 96141 0.66 0.645345
Target:  5'- cGCUCGUGUgUGUGacGCGCAGCGcGUacUCGc -3'
miRNA:   3'- -CGGGCGCGgGCGC--UGCGUCGC-CA--AGC- -5'
25042 5' -62.7 NC_005336.1 + 110374 0.66 0.645345
Target:  5'- cGUCCauGCGCCUGC-ACGCGcGCGGcagcuUUCGc -3'
miRNA:   3'- -CGGG--CGCGGGCGcUGCGU-CGCC-----AAGC- -5'
25042 5' -62.7 NC_005336.1 + 131914 0.66 0.645345
Target:  5'- -gCCGgGCCCaGCGAgGCcucGCGGcUCGc -3'
miRNA:   3'- cgGGCgCGGG-CGCUgCGu--CGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 49352 0.66 0.645345
Target:  5'- cGCCCGCGCgCGCGugaccagcuccgGCGCcGCGa---- -3'
miRNA:   3'- -CGGGCGCGgGCGC------------UGCGuCGCcaagc -5'
25042 5' -62.7 NC_005336.1 + 25414 0.66 0.645345
Target:  5'- -gCCGCGUcgaucuccagcuCCGCGGCGCGGcCGGc--- -3'
miRNA:   3'- cgGGCGCG------------GGCGCUGCGUC-GCCaagc -5'
25042 5' -62.7 NC_005336.1 + 125490 0.66 0.645345
Target:  5'- uGCgCGUGCgUGCGGucCGCAGCGGc--- -3'
miRNA:   3'- -CGgGCGCGgGCGCU--GCGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 133521 0.66 0.635607
Target:  5'- cGCgCGCGCUcagCGUGAcCGCGGcCGGcgCGa -3'
miRNA:   3'- -CGgGCGCGG---GCGCU-GCGUC-GCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 11895 0.66 0.635607
Target:  5'- uGCCCuGCGCCaGgGACGCcaccucuGCGGgcagCGu -3'
miRNA:   3'- -CGGG-CGCGGgCgCUGCGu------CGCCaa--GC- -5'
25042 5' -62.7 NC_005336.1 + 109139 0.66 0.635607
Target:  5'- aCCUGCGCacggCUGCGAgGCAGCuG-UCGg -3'
miRNA:   3'- cGGGCGCG----GGCGCUgCGUCGcCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 127827 0.66 0.635607
Target:  5'- aCCCGCcgGCCUGCG-CGCGGCugcuggccgcgGGcgCGg -3'
miRNA:   3'- cGGGCG--CGGGCGCuGCGUCG-----------CCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 6101 0.66 0.635607
Target:  5'- gGCgCGCGCCCucGCcGCGCAGCGc---- -3'
miRNA:   3'- -CGgGCGCGGG--CGcUGCGUCGCcaagc -5'
25042 5' -62.7 NC_005336.1 + 50956 0.66 0.635607
Target:  5'- cGCCaugagcgGCGUgCGcCGGCGCGGCGGc-CGg -3'
miRNA:   3'- -CGGg------CGCGgGC-GCUGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 68382 0.66 0.635607
Target:  5'- cGCCgGCGgCCGCGcuguuCGCGGCGcuGggCGn -3'
miRNA:   3'- -CGGgCGCgGGCGCu----GCGUCGC--CaaGC- -5'
25042 5' -62.7 NC_005336.1 + 469 0.66 0.635607
Target:  5'- gGCCgCGCGUCCGCGACGgccccgcuaaAGC-GUUUa -3'
miRNA:   3'- -CGG-GCGCGGGCGCUGCg---------UCGcCAAGc -5'
25042 5' -62.7 NC_005336.1 + 12638 0.66 0.635607
Target:  5'- cGCgCCGCGUgCGCGgccucuGCGCGGCGcugCGc -3'
miRNA:   3'- -CG-GGCGCGgGCGC------UGCGUCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 29378 0.66 0.635607
Target:  5'- gGCaCGCGCgCCGCGcuGCGCAucaGCGGcUCc -3'
miRNA:   3'- -CGgGCGCG-GGCGC--UGCGU---CGCCaAGc -5'
25042 5' -62.7 NC_005336.1 + 61043 0.66 0.635607
Target:  5'- aGCCgGUGCagcuCCGCGACcagcCGGCGGUa-- -3'
miRNA:   3'- -CGGgCGCG----GGCGCUGc---GUCGCCAagc -5'
25042 5' -62.7 NC_005336.1 + 81981 0.66 0.635607
Target:  5'- cGCCCGUGCUgGCcaugccccCGCGcCGGUUCa -3'
miRNA:   3'- -CGGGCGCGGgCGcu------GCGUcGCCAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.