miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 8819 0.66 0.997412
Target:  5'- -----cAGCGCcaGAAucacGUCCGAGCGCg -3'
miRNA:   3'- uuaauuUCGCGc-CUUc---CAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 6144 0.66 0.997412
Target:  5'- -----cAGCGCGGcc--UCCGAGCGUu -3'
miRNA:   3'- uuaauuUCGCGCCuuccAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 5751 0.66 0.997412
Target:  5'- -----uGGCGCGGcgcAGGUCC-AGCaGCg -3'
miRNA:   3'- uuaauuUCGCGCCu--UCCAGGcUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 27241 0.66 0.997412
Target:  5'- -----cAGCGCGG--GGUCC--ACGCg -3'
miRNA:   3'- uuaauuUCGCGCCuuCCAGGcuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 75595 0.66 0.997412
Target:  5'- ---gAAGGCGCGGAAGua--GAGCaGCa -3'
miRNA:   3'- uuaaUUUCGCGCCUUCcaggCUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 98641 0.66 0.997412
Target:  5'- ---cGAAGCGCGcGGA-GUCCGccucCGCg -3'
miRNA:   3'- uuaaUUUCGCGC-CUUcCAGGCuu--GCG- -5'
25044 5' -49.5 NC_005336.1 + 85193 0.66 0.997273
Target:  5'- ----uGAGCGCGGccAcguccgccguguacGGGUCgcgCGAGCGCa -3'
miRNA:   3'- uuaauUUCGCGCC--U--------------UCCAG---GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 30768 0.66 0.996924
Target:  5'- ----cGAGCGUGGAGGcGUgCgCGGACGa -3'
miRNA:   3'- uuaauUUCGCGCCUUC-CA-G-GCUUGCg -5'
25044 5' -49.5 NC_005336.1 + 106678 0.66 0.996924
Target:  5'- ------cGUGCGGcGGGGagUGAGCGCg -3'
miRNA:   3'- uuaauuuCGCGCC-UUCCagGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 61748 0.66 0.996924
Target:  5'- ------cGCGCGGcAGGG-CCG-AUGCg -3'
miRNA:   3'- uuaauuuCGCGCC-UUCCaGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 7226 0.66 0.996924
Target:  5'- ----cAGGUaGCGGAagagcAGGUCCGcgUGCg -3'
miRNA:   3'- uuaauUUCG-CGCCU-----UCCAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 118365 0.66 0.996924
Target:  5'- -----uAGCGCGGuAGGcCUgGAugGCg -3'
miRNA:   3'- uuaauuUCGCGCCuUCCaGG-CUugCG- -5'
25044 5' -49.5 NC_005336.1 + 32673 0.66 0.996872
Target:  5'- ----cGGGCGCGGuGAGGUCgGGggugacgaugaggAUGCa -3'
miRNA:   3'- uuaauUUCGCGCC-UUCCAGgCU-------------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 18294 0.66 0.996764
Target:  5'- ---gGGAGCGC--AAGGUCCGcgcaaggggggagcGACGCc -3'
miRNA:   3'- uuaaUUUCGCGccUUCCAGGC--------------UUGCG- -5'
25044 5' -49.5 NC_005336.1 + 21462 0.66 0.996363
Target:  5'- ------uGCGCGGAGcugcuGG-CCGAcGCGCg -3'
miRNA:   3'- uuaauuuCGCGCCUU-----CCaGGCU-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 125249 0.66 0.996363
Target:  5'- --aUGGuGCGCGuGAucGUgCCGGGCGCg -3'
miRNA:   3'- uuaAUUuCGCGC-CUucCA-GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 129924 0.66 0.996363
Target:  5'- --aUGGAGCucgcCGGcAAGGgCUGGACGCg -3'
miRNA:   3'- uuaAUUUCGc---GCC-UUCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 123968 0.66 0.996363
Target:  5'- ----cGGGCGCGGAcGuGaCCGcGCGCa -3'
miRNA:   3'- uuaauUUCGCGCCUuC-CaGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 128070 0.66 0.996363
Target:  5'- ----uGAGUGCGGAGaGcgCgCGAGCGCa -3'
miRNA:   3'- uuaauUUCGCGCCUUcCa-G-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 125921 0.66 0.996363
Target:  5'- --cUAcGGCGCGGu-GGUCgCG-GCGCc -3'
miRNA:   3'- uuaAUuUCGCGCCuuCCAG-GCuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.