miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 728 0.66 0.729422
Target:  5'- cCGCgggGuACGCGGGCGagagcGCGGCGccCGCGg -3'
miRNA:   3'- -GCGa--C-UGCGCCCGU-----CGCUGUacGCGU- -5'
25505 3' -59.8 NC_005337.1 + 10873 0.66 0.729422
Target:  5'- uCGCcGA-GCGGGCgAGCaccACGUGUGCGg -3'
miRNA:   3'- -GCGaCUgCGCCCG-UCGc--UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 38330 0.66 0.729422
Target:  5'- aCGCcGGCGcCGGGCGaguacGCG-C-UGCGCAu -3'
miRNA:   3'- -GCGaCUGC-GCCCGU-----CGCuGuACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 728 0.66 0.729422
Target:  5'- cCGCgggGuACGCGGGCGagagcGCGGCGccCGCGg -3'
miRNA:   3'- -GCGa--C-UGCGCCCGU-----CGCUGUacGCGU- -5'
25505 3' -59.8 NC_005337.1 + 80046 0.66 0.729422
Target:  5'- aCGCUGGCGC-GGCGGaCGcuguCAUccGCGCc -3'
miRNA:   3'- -GCGACUGCGcCCGUC-GCu---GUA--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 124623 0.66 0.729422
Target:  5'- aGCUcacGCGCGGGCuGCucaGCAUcGCGCu -3'
miRNA:   3'- gCGAc--UGCGCCCGuCGc--UGUA-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 45888 0.66 0.729422
Target:  5'- uCGUccuUGcUGCGGuGCGG-GACAUGCGCu -3'
miRNA:   3'- -GCG---ACuGCGCC-CGUCgCUGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 14621 0.66 0.727476
Target:  5'- cCGgUGACuGCGGGCAG-GGCugguaugugucGCGCAc -3'
miRNA:   3'- -GCgACUG-CGCCCGUCgCUGua---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 133147 0.66 0.725526
Target:  5'- aGCUGgucgcgcGCGUGcugcggcugcucccGGCGGCGGCGcUGCGCc -3'
miRNA:   3'- gCGAC-------UGCGC--------------CCGUCGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 133147 0.66 0.725526
Target:  5'- aGCUGgucgcgcGCGUGcugcggcugcucccGGCGGCGGCGcUGCGCc -3'
miRNA:   3'- gCGAC-------UGCGC--------------CCGUCGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 45406 0.66 0.719659
Target:  5'- uGCUGACGCuccacuGcGCGGCGuCGgaGCGCAg -3'
miRNA:   3'- gCGACUGCGc-----C-CGUCGCuGUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 28497 0.66 0.719659
Target:  5'- gCGC-GGCGCGcGGUcgcGCGGCAcUGCGUg -3'
miRNA:   3'- -GCGaCUGCGC-CCGu--CGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 34141 0.66 0.719659
Target:  5'- cCGCacgaACGCGGGguGCaACAgguccacggggaUGCGCAg -3'
miRNA:   3'- -GCGac--UGCGCCCguCGcUGU------------ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 68303 0.66 0.719659
Target:  5'- gGCgugGACGCGcGuGCccgaggagGGCGGCAcGCGCGu -3'
miRNA:   3'- gCGa--CUGCGC-C-CG--------UCGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 118781 0.66 0.719659
Target:  5'- --aUGACGCcGGCGGCGGCGccgucgugccGCGCGc -3'
miRNA:   3'- gcgACUGCGcCCGUCGCUGUa---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132293 0.66 0.719659
Target:  5'- aGCUGACGCccgacccGGCgugcacGGCGGCGgaggggGCGCu -3'
miRNA:   3'- gCGACUGCGc------CCG------UCGCUGUa-----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 2776 0.66 0.718679
Target:  5'- gGCUGuccacgaGCGCGGaccGguGCcGCAUGUGCAc -3'
miRNA:   3'- gCGAC-------UGCGCC---CguCGcUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 14925 0.66 0.709823
Target:  5'- uGCUGcCGCuGGGgAGCcaGGCcuUGCGCAg -3'
miRNA:   3'- gCGACuGCG-CCCgUCG--CUGu-ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 70057 0.66 0.709823
Target:  5'- gCGCUGcccguCGCGGaCcGCGAacuCGUGCGCGa -3'
miRNA:   3'- -GCGACu----GCGCCcGuCGCU---GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.