miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 127154 0.69 0.549309
Target:  5'- uGCUGauccGCGCGGGC-GCGgACGUcCGCGa -3'
miRNA:   3'- gCGAC----UGCGCCCGuCGC-UGUAcGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127037 0.77 0.169435
Target:  5'- uGCUGGCgGCGGGC-GCGGagGUGCGCAc -3'
miRNA:   3'- gCGACUG-CGCCCGuCGCUg-UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 126932 0.76 0.203502
Target:  5'- uGCUGGagGCGGGCGcggacgugaacgcgcGCGACGUGUGCGg -3'
miRNA:   3'- gCGACUg-CGCCCGU---------------CGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 126419 0.69 0.539463
Target:  5'- cCGCccGGCGCGcGaCGGCGcGCGUGCGCGu -3'
miRNA:   3'- -GCGa-CUGCGCcC-GUCGC-UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 126143 0.68 0.609328
Target:  5'- gGUgGAUGUGGGCGGCGAgAacUGCGa- -3'
miRNA:   3'- gCGaCUGCGCCCGUCGCUgU--ACGCgu -5'
25505 3' -59.8 NC_005337.1 + 125948 0.69 0.539463
Target:  5'- uGCUcGAgGCGGGCgugGGCGugAacGCGCGg -3'
miRNA:   3'- gCGA-CUgCGCCCG---UCGCugUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 125115 0.73 0.322927
Target:  5'- aCGCUGACGaCGaGGCuagcgaccgccaAGCGGCGaGCGCGc -3'
miRNA:   3'- -GCGACUGC-GC-CCG------------UCGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 124623 0.66 0.729422
Target:  5'- aGCUcacGCGCGGGCuGCucaGCAUcGCGCu -3'
miRNA:   3'- gCGAc--UGCGCCCGuCGc--UGUA-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 124565 0.66 0.699923
Target:  5'- cCGCUG-CGCGaGGCcGCGucCAaGCGCu -3'
miRNA:   3'- -GCGACuGCGC-CCGuCGCu-GUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 122799 0.66 0.709823
Target:  5'- uGCUGcGCGCGGccaucgaccGCAGCG---UGCGCGu -3'
miRNA:   3'- gCGAC-UGCGCC---------CGUCGCuguACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 122600 0.71 0.410023
Target:  5'- -cCUGgaccACGCGGGCGGCGGCGUGUu-- -3'
miRNA:   3'- gcGAC----UGCGCCCGUCGCUGUACGcgu -5'
25505 3' -59.8 NC_005337.1 + 122528 0.7 0.454155
Target:  5'- uGCUGGCcCuGGcGCGGCGACGcGCGCu -3'
miRNA:   3'- gCGACUGcG-CC-CGUCGCUGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 122299 0.66 0.699923
Target:  5'- gCGCUGAacaccuguccccCGCuGGaC-GCGAUAUGCGCGu -3'
miRNA:   3'- -GCGACU------------GCGcCC-GuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 121997 0.68 0.55921
Target:  5'- aGCUccugcGCGCGGGguGCGACccgGcCGCGa -3'
miRNA:   3'- gCGAc----UGCGCCCguCGCUGua-C-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 121458 0.66 0.693956
Target:  5'- uGCUgGACGCGGGCGcggaucucaacagccGgGACAucUGCGgGu -3'
miRNA:   3'- gCGA-CUGCGCCCGU---------------CgCUGU--ACGCgU- -5'
25505 3' -59.8 NC_005337.1 + 118932 0.7 0.472517
Target:  5'- aGCgucGCGCGGGCgcAGCGuGCGUcGCGCGa -3'
miRNA:   3'- gCGac-UGCGCCCG--UCGC-UGUA-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 118781 0.66 0.719659
Target:  5'- --aUGACGCcGGCGGCGGCGccgucgugccGCGCGc -3'
miRNA:   3'- gcgACUGCGcCCGUCGCUGUa---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 118473 0.67 0.639652
Target:  5'- gGgaGACGCuGGGUgacAGCGACA-GCGaCAg -3'
miRNA:   3'- gCgaCUGCG-CCCG---UCGCUGUaCGC-GU- -5'
25505 3' -59.8 NC_005337.1 + 117817 0.68 0.579153
Target:  5'- gGCgUGGCGCccgGGGacccgGGCGGgGUGCGCAc -3'
miRNA:   3'- gCG-ACUGCG---CCCg----UCGCUgUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 117567 0.72 0.35995
Target:  5'- -aCUGACGCGucacccGGCAGCGGaggccgcCGUGCGCGa -3'
miRNA:   3'- gcGACUGCGC------CCGUCGCU-------GUACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.