miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 6448 0.66 0.874647
Target:  5'- uGCgGuCGACgACGCUCCgcacguugacgucaGCGCCGGCGu -3'
miRNA:   3'- -CGaC-GUUG-UGCGAGGa-------------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 123966 0.66 0.871662
Target:  5'- cGCUGCAcauAgACGCgaaCgGCGCCGauGCGCg -3'
miRNA:   3'- -CGACGU---UgUGCGag-GaCGUGGU--CGUG- -5'
25505 5' -56 NC_005337.1 + 124635 0.66 0.871662
Target:  5'- gGCUGCucagcauCGCGCUCUgcgaGguCgAGCGCa -3'
miRNA:   3'- -CGACGuu-----GUGCGAGGa---CguGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 2697 0.66 0.871662
Target:  5'- aGCUGCGGCguggggACGCggaggaGCACgAGCGCg -3'
miRNA:   3'- -CGACGUUG------UGCGagga--CGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 72856 0.66 0.871662
Target:  5'- cCUGCGGCugucCGCgaaCCUGCuggACguGCACg -3'
miRNA:   3'- cGACGUUGu---GCGa--GGACG---UGguCGUG- -5'
25505 5' -56 NC_005337.1 + 84352 0.66 0.871662
Target:  5'- uGCUGUcccCGCGCUcgcgCCUGUACCgAGC-Ca -3'
miRNA:   3'- -CGACGuu-GUGCGA----GGACGUGG-UCGuG- -5'
25505 5' -56 NC_005337.1 + 131319 0.66 0.871662
Target:  5'- uGCgagGCGGagacCGCGCUCaugcGCGCCGuGCGCg -3'
miRNA:   3'- -CGa--CGUU----GUGCGAGga--CGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 21658 0.66 0.871662
Target:  5'- cGCUGgGGCACGUgcucgCgCUGCACUaccuGGuCACg -3'
miRNA:   3'- -CGACgUUGUGCGa----G-GACGUGG----UC-GUG- -5'
25505 5' -56 NC_005337.1 + 129788 0.66 0.871662
Target:  5'- cGCUGCAcguGCugGCgaugCagaGCACCugccGCGCg -3'
miRNA:   3'- -CGACGU---UGugCGa---Gga-CGUGGu---CGUG- -5'
25505 5' -56 NC_005337.1 + 81283 0.66 0.871662
Target:  5'- cGCUacaGgAGCACGCgCCUGaucucgcgguCCAGCACu -3'
miRNA:   3'- -CGA---CgUUGUGCGaGGACgu--------GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 17035 0.66 0.871662
Target:  5'- aCUGCGuCGCGUUCC-GCGCgGucuGCACg -3'
miRNA:   3'- cGACGUuGUGCGAGGaCGUGgU---CGUG- -5'
25505 5' -56 NC_005337.1 + 24542 0.66 0.87091
Target:  5'- uGCUGCGcACcgccgacugcucgGCGUUCCgGCGCCAuCGCc -3'
miRNA:   3'- -CGACGU-UG-------------UGCGAGGaCGUGGUcGUG- -5'
25505 5' -56 NC_005337.1 + 101579 0.66 0.87091
Target:  5'- uUUGCGcacuucauggacuACGCGCUCCgacGCcucuccGCCAGCAg -3'
miRNA:   3'- cGACGU-------------UGUGCGAGGa--CG------UGGUCGUg -5'
25505 5' -56 NC_005337.1 + 67863 0.66 0.87091
Target:  5'- gGCUGCAGCGCGgUgagguugUCgagGCG-CAGCGCg -3'
miRNA:   3'- -CGACGUUGUGCgA-------GGa--CGUgGUCGUG- -5'
25505 5' -56 NC_005337.1 + 73050 0.66 0.867116
Target:  5'- cGCUGCGGCuguccauCGCcaccgUCgUGCACCAcuuucuggugaagacGCGCg -3'
miRNA:   3'- -CGACGUUGu------GCG-----AGgACGUGGU---------------CGUG- -5'
25505 5' -56 NC_005337.1 + 115457 0.66 0.864041
Target:  5'- gGCguaCGACGCGCUggcguaCUcGCACCGGUGCa -3'
miRNA:   3'- -CGac-GUUGUGCGAg-----GA-CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 131366 0.66 0.864041
Target:  5'- --gGCGACGcCGCUCCUGgACguGguCu -3'
miRNA:   3'- cgaCGUUGU-GCGAGGACgUGguCguG- -5'
25505 5' -56 NC_005337.1 + 118777 0.66 0.864041
Target:  5'- uGCUgGCGACGCugUCC-GCAgCAGCGCc -3'
miRNA:   3'- -CGA-CGUUGUGcgAGGaCGUgGUCGUG- -5'
25505 5' -56 NC_005337.1 + 118760 0.66 0.864041
Target:  5'- uGCUGCuGCGCGacgUCCuagaUGaCGCCGGCGg -3'
miRNA:   3'- -CGACGuUGUGCg--AGG----AC-GUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 66516 0.66 0.864041
Target:  5'- cGCUGCAGCcggccgagACGCUggagCUGCGCgCcGCGCc -3'
miRNA:   3'- -CGACGUUG--------UGCGAg---GACGUG-GuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.