miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 33688 0.66 0.687665
Target:  5'- aGGCCgGCGGgCGCcaccuccucgaaGGUgGUGGcgccgaggaugcGGUCGCg -3'
miRNA:   3'- -CCGG-CGCCaGCG------------CCAgCGCC------------UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 71496 0.66 0.687665
Target:  5'- cGGaCGCGGugcccgacuUCGCGuuccaccgccgcGUCGCGGAgcugGUCGUg -3'
miRNA:   3'- -CCgGCGCC---------AGCGC------------CAGCGCCU----CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 86462 0.66 0.687665
Target:  5'- aGGCCG-GcGUCGaaG-CGCgaGGGGUCGCa -3'
miRNA:   3'- -CCGGCgC-CAGCgcCaGCG--CCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 35251 0.66 0.687665
Target:  5'- uGGCCcUGGUCugGCuGGUCGacagGGAG-CGCg -3'
miRNA:   3'- -CCGGcGCCAG--CG-CCAGCg---CCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 83364 0.66 0.687665
Target:  5'- uGGCUGCGGaC-CGGcCGCuGGG-CGCg -3'
miRNA:   3'- -CCGGCGCCaGcGCCaGCGcCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 17015 0.66 0.687665
Target:  5'- cGUCGgGGUCuGCGGgccgCGCGaAGgCGCa -3'
miRNA:   3'- cCGGCgCCAG-CGCCa---GCGCcUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 76831 0.66 0.687665
Target:  5'- gGGCaUGC--UCGCGGUgGcCGGAG-CGCg -3'
miRNA:   3'- -CCG-GCGccAGCGCCAgC-GCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 57125 0.66 0.687665
Target:  5'- -cCCGUGGUCGCcgccagccuGGacgcCGUGGAG-CGCa -3'
miRNA:   3'- ccGGCGCCAGCG---------CCa---GCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 6021 0.66 0.686705
Target:  5'- aGCgGCGuccgcccagaguuGUCGCGGgCGUGGAuGUcCGCg -3'
miRNA:   3'- cCGgCGC-------------CAGCGCCaGCGCCU-CA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 89943 0.66 0.684784
Target:  5'- gGGCCGCGcGgauaaaggCGCGGcCGCagcacgcgcucgggGGAGcggCGCc -3'
miRNA:   3'- -CCGGCGC-Ca-------GCGCCaGCG--------------CCUCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 38871 0.66 0.681899
Target:  5'- uGGaCgCGCGGUucugcucggaguucgCGCGcGUCGCGcGGccGUCGCu -3'
miRNA:   3'- -CC-G-GCGCCA---------------GCGC-CAGCGC-CU--CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 13075 0.66 0.678047
Target:  5'- uGCgCGCGGgCGCGGaaGCGGcGaCGCc -3'
miRNA:   3'- cCG-GCGCCaGCGCCagCGCCuCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 41603 0.66 0.678047
Target:  5'- aGGgCGUGGUCGUGG-CGaaGGAGgcCGUg -3'
miRNA:   3'- -CCgGCGCCAGCGCCaGCg-CCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 3264 0.66 0.674191
Target:  5'- cGuuGCGGUgCGCGGcggccacgugcaGCGGcGUCGUg -3'
miRNA:   3'- cCggCGCCA-GCGCCag----------CGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 60194 0.66 0.672261
Target:  5'- -cCUGCGGgUGCGG-CGCGGGGggggacggcuugggCGCg -3'
miRNA:   3'- ccGGCGCCaGCGCCaGCGCCUCa-------------GCG- -5'
25507 5' -62.1 NC_005337.1 + 109093 0.66 0.668396
Target:  5'- uGGCCGCGGcCGaggccaGGgccacacagagCGCGGAcacCGCg -3'
miRNA:   3'- -CCGGCGCCaGCg-----CCa----------GCGCCUca-GCG- -5'
25507 5' -62.1 NC_005337.1 + 53660 0.66 0.668396
Target:  5'- cGCCGCGaugcagcgcGUCgGCGGcCGCaaGGAGgccgCGCu -3'
miRNA:   3'- cCGGCGC---------CAG-CGCCaGCG--CCUCa---GCG- -5'
25507 5' -62.1 NC_005337.1 + 31250 0.66 0.668396
Target:  5'- aGGUCGCGGcuccggcaGCGGaUGCGGuG-CGCc -3'
miRNA:   3'- -CCGGCGCCag------CGCCaGCGCCuCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 42139 0.66 0.668396
Target:  5'- uGGcCCGCGG-CGC-GUC-CGGGGUCu- -3'
miRNA:   3'- -CC-GGCGCCaGCGcCAGcGCCUCAGcg -5'
25507 5' -62.1 NC_005337.1 + 91554 0.66 0.668396
Target:  5'- cGGCCGUGGccaCGUaccGGUacaccuCGGGGUCGUa -3'
miRNA:   3'- -CCGGCGCCa--GCG---CCAgc----GCCUCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.