miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 80608 0.66 0.796095
Target:  5'- cCUUGCgGCC-GCcgACGCGCuGcaUCGCGGCg -3'
miRNA:   3'- -GGACG-UGGuCG--UGCGCGuC--AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 86784 0.66 0.796095
Target:  5'- uCC-GCACgGGCgGCG-GCAGguccCGCGACg -3'
miRNA:   3'- -GGaCGUGgUCG-UGCgCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 82687 0.66 0.796095
Target:  5'- --aGCGCCAGCGCGagaaGCAGcUCcaaGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCg---CGUC-AGcg-CUG- -5'
25508 3' -58.6 NC_005337.1 + 53652 0.66 0.796095
Target:  5'- uCUUcCGCCA-CGCGCGCu-UCGCGGCg -3'
miRNA:   3'- -GGAcGUGGUcGUGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2176 0.66 0.796095
Target:  5'- aCgGCGCCGacgcGCACgGCGCAG--GCGGCg -3'
miRNA:   3'- gGaCGUGGU----CGUG-CGCGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84820 0.66 0.796095
Target:  5'- gCCaGCAacgCAGCAuCGCGCA--CGCGGCc -3'
miRNA:   3'- -GGaCGUg--GUCGU-GCGCGUcaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 31059 0.66 0.796095
Target:  5'- --gGUugCAGCGgGCcauGCAGUUGcCGACa -3'
miRNA:   3'- ggaCGugGUCGUgCG---CGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 127629 0.66 0.796095
Target:  5'- gUUGUACC-GCGCG-GCGGUCuucaacccuGCGGCg -3'
miRNA:   3'- gGACGUGGuCGUGCgCGUCAG---------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 118937 0.66 0.796095
Target:  5'- --cGCGCgGGCGCaGCGUGcGUCGCG-Cg -3'
miRNA:   3'- ggaCGUGgUCGUG-CGCGU-CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 60009 0.66 0.796095
Target:  5'- -aUGCGgcuauuuuUCGGCGCGCGgAGacccgCGCGGCg -3'
miRNA:   3'- ggACGU--------GGUCGUGCGCgUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 129244 0.66 0.796095
Target:  5'- gCUGCAUCuGUACGUGCucaaCGcCGACg -3'
miRNA:   3'- gGACGUGGuCGUGCGCGuca-GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 79400 0.66 0.796095
Target:  5'- gCUGCuCCA-CGCG-GCGG-CGCGGCa -3'
miRNA:   3'- gGACGuGGUcGUGCgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 116204 0.66 0.796095
Target:  5'- uCCUcUGCCAGCGCGUGUgcgcccAGuUUGCGAUg -3'
miRNA:   3'- -GGAcGUGGUCGUGCGCG------UC-AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 126989 0.66 0.793405
Target:  5'- aCUGCuacguCCAGCACgacuacguccagcuGCGC-GUCGUGGa -3'
miRNA:   3'- gGACGu----GGUCGUG--------------CGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 56178 0.66 0.790702
Target:  5'- uCCUGgACCucAGCGCGCggaacaagcucuaccGCAaGgagCGCGGCa -3'
miRNA:   3'- -GGACgUGG--UCGUGCG---------------CGU-Ca--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 77637 0.66 0.78708
Target:  5'- aCCUugcGCGCCAGCGugcccgUGCGCgAGgucUCGCaGACg -3'
miRNA:   3'- -GGA---CGUGGUCGU------GCGCG-UC---AGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 7824 0.66 0.78708
Target:  5'- uCCUccGCGaCAGCGCGCGguGguacaCGCGcACg -3'
miRNA:   3'- -GGA--CGUgGUCGUGCGCguCa----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 52520 0.66 0.78708
Target:  5'- gCUGUACCGGCACG-GCA--UGCugGACg -3'
miRNA:   3'- gGACGUGGUCGUGCgCGUcaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 25719 0.66 0.78708
Target:  5'- gCC-GCGCCgccagcgucaGGCGCGCGCcccgcaccGUCGCGcCg -3'
miRNA:   3'- -GGaCGUGG----------UCGUGCGCGu-------CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 6874 0.66 0.78708
Target:  5'- -gUGCAgCAGCGUGCGCccguccauGUCGCGcGCg -3'
miRNA:   3'- ggACGUgGUCGUGCGCGu-------CAGCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.