Results 1 - 20 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 51518 | 0.66 | 0.853361 |
Target: 5'- aUCaUCAuGGCGCUCuucgGCGUGcggcuGCCGGg -3' miRNA: 3'- -AGgAGUuCUGCGAGua--CGCGC-----CGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 102233 | 0.66 | 0.853361 |
Target: 5'- cCCggcuGugGCgCGUGCaGaCGGCCGGg -3' miRNA: 3'- aGGaguuCugCGaGUACG-C-GCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 82600 | 0.66 | 0.853361 |
Target: 5'- gCCUCGccguAGGCGUcCAgggGCGaCGGCgGGc -3' miRNA: 3'- aGGAGU----UCUGCGaGUa--CGC-GCCGgCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 130783 | 0.66 | 0.853361 |
Target: 5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3' miRNA: 3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 37889 | 0.66 | 0.853361 |
Target: 5'- gUCCUCcgccgccUGCUCggGCGCGaCCGGg -3' miRNA: 3'- -AGGAGuucu---GCGAGuaCGCGCcGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 120558 | 0.66 | 0.853361 |
Target: 5'- gUCCUCGcGGA-GCUCggugGUGUGCGGCaaccCGGc -3' miRNA: 3'- -AGGAGU-UCUgCGAG----UACGCGCCG----GCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 101563 | 0.66 | 0.853361 |
Target: 5'- uUCCUCAAGGagcUGCUCGUGaGCGGa--- -3' miRNA: 3'- -AGGAGUUCU---GCGAGUACgCGCCggcc -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 98646 | 0.66 | 0.852583 |
Target: 5'- cCCUCcuGAUGCUCGUcaucgugGUGCuGGgCGGa -3' miRNA: 3'- aGGAGuuCUGCGAGUA-------CGCG-CCgGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 80478 | 0.66 | 0.845492 |
Target: 5'- aCUUCGGGAgcaCGUacUCgAUGCgccccGCGGCCGGg -3' miRNA: 3'- aGGAGUUCU---GCG--AG-UACG-----CGCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 23535 | 0.66 | 0.845492 |
Target: 5'- -gCUCAuccGGGCcaugGCcaUCAUGCGguCGGCCGGg -3' miRNA: 3'- agGAGU---UCUG----CG--AGUACGC--GCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 86650 | 0.66 | 0.845492 |
Target: 5'- cUCCgggaacGugGCUUucaGCGCGGCCGc -3' miRNA: 3'- -AGGaguu--CugCGAGua-CGCGCCGGCc -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 38860 | 0.66 | 0.845492 |
Target: 5'- cCCgCGuGACGCUCGUGCG-GGCg-- -3' miRNA: 3'- aGGaGUuCUGCGAGUACGCgCCGgcc -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 103858 | 0.66 | 0.845492 |
Target: 5'- aUCCUCAAGcgGCaGUUCGcggaGCGCGGCgGc -3' miRNA: 3'- -AGGAGUUC--UG-CGAGUa---CGCGCCGgCc -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 24434 | 0.66 | 0.845492 |
Target: 5'- aCCUCAAGuuCGCgCAgacCGCcGCCGGg -3' miRNA: 3'- aGGAGUUCu-GCGaGUac-GCGcCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 113157 | 0.66 | 0.845492 |
Target: 5'- gUUCgCGGuGCGCUgCGUG-GCGGCCGGc -3' miRNA: 3'- -AGGaGUUcUGCGA-GUACgCGCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 1873 | 0.66 | 0.837433 |
Target: 5'- cUCCUCgAAGAuCGCgg--GcCGgGGCCGGu -3' miRNA: 3'- -AGGAG-UUCU-GCGaguaC-GCgCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 71264 | 0.66 | 0.837433 |
Target: 5'- gUCgaCAAcGCGCUCAUGCGCcgcguggcGCUGGu -3' miRNA: 3'- -AGgaGUUcUGCGAGUACGCGc-------CGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 45040 | 0.66 | 0.837433 |
Target: 5'- gCCgCAcGAUGCUCcgcaagcuggGCGcCGGCCGGc -3' miRNA: 3'- aGGaGUuCUGCGAGua--------CGC-GCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 13012 | 0.66 | 0.837433 |
Target: 5'- cCCUgAAGACgGCg---GUGUGGUCGGa -3' miRNA: 3'- aGGAgUUCUG-CGaguaCGCGCCGGCC- -5' |
|||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 86172 | 0.66 | 0.829189 |
Target: 5'- gUCUUCAcGaaGCGCUCcgGCGCGuCCGu -3' miRNA: 3'- -AGGAGUuC--UGCGAGuaCGCGCcGGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home