miRNA display CGI


Results 1 - 20 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 9752 0.66 0.686407
Target:  5'- -aGCGCGCGUcgGCcgGCGCCgGgUUGGCa -3'
miRNA:   3'- ccCGCGUGCGa-CGa-CGUGG-UgGACCG- -5'
25510 3' -60.7 NC_005337.1 + 24534 0.66 0.686407
Target:  5'- -cGCGgACguGCUGC-GCACCGCCgacugcucGGCg -3'
miRNA:   3'- ccCGCgUG--CGACGaCGUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 133423 0.66 0.686407
Target:  5'- -cGCGCccGCGCUGCc-CGCCGCCUucgucgagcccgGGCc -3'
miRNA:   3'- ccCGCG--UGCGACGacGUGGUGGA------------CCG- -5'
25510 3' -60.7 NC_005337.1 + 99380 0.66 0.686407
Target:  5'- -cGUGgACGC-GCgGCACCACCUgccGGUg -3'
miRNA:   3'- ccCGCgUGCGaCGaCGUGGUGGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 88263 0.66 0.686407
Target:  5'- cGGCGCGC-CgGCggGCGCCGCggaggacaUGGCc -3'
miRNA:   3'- cCCGCGUGcGaCGa-CGUGGUGg-------ACCG- -5'
25510 3' -60.7 NC_005337.1 + 38936 0.66 0.686407
Target:  5'- cGGCGCuccgGCGCUaCUGCgacGCgCACCgaucGGCg -3'
miRNA:   3'- cCCGCG----UGCGAcGACG---UG-GUGGa---CCG- -5'
25510 3' -60.7 NC_005337.1 + 121498 0.66 0.686407
Target:  5'- cGGGUuCACGCcGCUGCACauguaCAUCUGcuacGCg -3'
miRNA:   3'- -CCCGcGUGCGaCGACGUG-----GUGGAC----CG- -5'
25510 3' -60.7 NC_005337.1 + 1156 0.66 0.686407
Target:  5'- gGGGaGCGCGCcgGCggagcgGC-CCGCUaGGCg -3'
miRNA:   3'- -CCCgCGUGCGa-CGa-----CGuGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 16761 0.66 0.686407
Target:  5'- cGGCGCGCcgGCUGaugucgUGCACCGCgUcGCc -3'
miRNA:   3'- cCCGCGUG--CGACg-----ACGUGGUGgAcCG- -5'
25510 3' -60.7 NC_005337.1 + 133423 0.66 0.686407
Target:  5'- -cGCGCccGCGCUGCc-CGCCGCCUucgucgagcccgGGCc -3'
miRNA:   3'- ccCGCG--UGCGACGacGUGGUGGA------------CCG- -5'
25510 3' -60.7 NC_005337.1 + 4364 0.66 0.686407
Target:  5'- aGGCG-GCGgUGUUGUugUACCcGGCc -3'
miRNA:   3'- cCCGCgUGCgACGACGugGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 127046 0.66 0.686407
Target:  5'- cGGGCGCGgaGgUGC-GCACCGaa-GGCg -3'
miRNA:   3'- -CCCGCGUg-CgACGaCGUGGUggaCCG- -5'
25510 3' -60.7 NC_005337.1 + 87599 0.66 0.685413
Target:  5'- cGGCGCcgcucggGCGaCUGCUGCGCgAUCgcgcGCa -3'
miRNA:   3'- cCCGCG-------UGC-GACGACGUGgUGGac--CG- -5'
25510 3' -60.7 NC_005337.1 + 570 0.66 0.676452
Target:  5'- -cGCGUACGCcGCgGCcgcgcggaaGCCGCC-GGCg -3'
miRNA:   3'- ccCGCGUGCGaCGaCG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 24905 0.66 0.676452
Target:  5'- -cGCGCGUGCccgccuccgUGUacUGCACCGCCUcgGGCg -3'
miRNA:   3'- ccCGCGUGCG---------ACG--ACGUGGUGGA--CCG- -5'
25510 3' -60.7 NC_005337.1 + 11863 0.66 0.676452
Target:  5'- cGGCGCggacagGCGCcGC-GCGCCGCC-GcGCa -3'
miRNA:   3'- cCCGCG------UGCGaCGaCGUGGUGGaC-CG- -5'
25510 3' -60.7 NC_005337.1 + 8649 0.66 0.676452
Target:  5'- -cGUGC-CGgaGCUuCAgCGCCUGGCa -3'
miRNA:   3'- ccCGCGuGCgaCGAcGUgGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 570 0.66 0.676452
Target:  5'- -cGCGUACGCcGCgGCcgcgcggaaGCCGCC-GGCg -3'
miRNA:   3'- ccCGCGUGCGaCGaCG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 120527 0.66 0.676452
Target:  5'- cGGGCGCGCGgagaucacGCU-CACCACUagccacGGCg -3'
miRNA:   3'- -CCCGCGUGCga------CGAcGUGGUGGa-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 5564 0.66 0.676452
Target:  5'- gGGGaacgcaGCGCGCUcgcagaucaGCUGCGCUAUUcGGUc -3'
miRNA:   3'- -CCCg-----CGUGCGA---------CGACGUGGUGGaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.