miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 128309 0.66 0.873999
Target:  5'- -cGCCGucUGcUCGCGCGcgGCGCgAGCg -3'
miRNA:   3'- aaCGGU--ACaAGCGCGUcaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 45883 0.66 0.873999
Target:  5'- -cGCCAUGUacucggacugCGCGUGG-GCGUgGGCg -3'
miRNA:   3'- aaCGGUACAa---------GCGCGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 76397 0.66 0.873999
Target:  5'- --aCCGUG--CGCGCGGgGCGCUGGCg -3'
miRNA:   3'- aacGGUACaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 67643 0.66 0.866358
Target:  5'- -aGCUGg--UCGCGCGcGUGCuCCAGCa -3'
miRNA:   3'- aaCGGUacaAGCGCGU-CACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 115604 0.66 0.866358
Target:  5'- cUGCCcgGgcUGCGCGGguacgccacCGCCGACc -3'
miRNA:   3'- aACGGuaCaaGCGCGUCac-------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 128039 0.66 0.866358
Target:  5'- -gGCCAaGgcCGUGCAcGUGC-CCAACg -3'
miRNA:   3'- aaCGGUaCaaGCGCGU-CACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97240 0.66 0.866358
Target:  5'- -cGCCAacgacgaguucUG-UCGgGCGGUGaGCCGGCg -3'
miRNA:   3'- aaCGGU-----------ACaAGCgCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 68732 0.66 0.866358
Target:  5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3'
miRNA:   3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5'
25514 5' -55.6 NC_005337.1 + 132102 0.66 0.866358
Target:  5'- -cGCCGUGcgcgUCgGCGCcGUGCG-CGGCa -3'
miRNA:   3'- aaCGGUACa---AG-CGCGuCACGCgGUUG- -5'
25514 5' -55.6 NC_005337.1 + 64363 0.66 0.859288
Target:  5'- -aGCCGUGUccagcgCGCGCAGgagcacguugucggaGCGgCGGCa -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa--------------CGCgGUUG- -5'
25514 5' -55.6 NC_005337.1 + 92891 0.66 0.858491
Target:  5'- cUGCCcg---CGCGCGGUugccgGCGUCGGCg -3'
miRNA:   3'- aACGGuacaaGCGCGUCA-----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 77760 0.66 0.858491
Target:  5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3'
miRNA:   3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 21170 0.66 0.858491
Target:  5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3'
miRNA:   3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 62755 0.66 0.858491
Target:  5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3'
miRNA:   3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 34800 0.66 0.858491
Target:  5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3'
miRNA:   3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 57706 0.66 0.857692
Target:  5'- aUGCa--GUUCGCGCcggagguGGUGC-CCAACu -3'
miRNA:   3'- aACGguaCAAGCGCG-------UCACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 68510 0.66 0.850405
Target:  5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3'
miRNA:   3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 1978 0.66 0.850405
Target:  5'- -cGCCGUGcaCGC-CGGgucgGCGUCAGCu -3'
miRNA:   3'- aaCGGUACaaGCGcGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 72356 0.66 0.850405
Target:  5'- -cGCCAaGUUcCGCGCGaucGCGCgGACg -3'
miRNA:   3'- aaCGGUaCAA-GCGCGUca-CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 38830 0.66 0.850405
Target:  5'- -cGCCGcgcUGgaCGCGUAcgccggccuGUGCGCCAAg -3'
miRNA:   3'- aaCGGU---ACaaGCGCGU---------CACGCGGUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.