miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 68262 0.66 0.698116
Target:  5'- uGGGCgagcGUCGAGGacuucgacgucUGCGGccGGCCGgCGg -3'
miRNA:   3'- -CCCG----UAGCUCC-----------GCGUCuaCCGGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 74243 0.66 0.698116
Target:  5'- aGGGCggGUCGccGCGCGGGUcuccGCgCGCCGa -3'
miRNA:   3'- -CCCG--UAGCucCGCGUCUAc---CG-GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 130724 0.66 0.698116
Target:  5'- uGGaGCucGUCGA-GCGCucGUGGCCGCUg -3'
miRNA:   3'- -CC-CG--UAGCUcCGCGucUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 51745 0.66 0.698116
Target:  5'- cGGCAggcugccCGcccuGGCGCuGGAcGGCCGCCc -3'
miRNA:   3'- cCCGUa------GCu---CCGCG-UCUaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 40859 0.66 0.698116
Target:  5'- -cGCGUCGccgugcccccGGUGCAGAgGGCgGCCGu -3'
miRNA:   3'- ccCGUAGCu---------CCGCGUCUaCCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 39643 0.66 0.692184
Target:  5'- cGGCggUGuuGGUGCuGAuauucugugcggccaUGGCCGCCAa -3'
miRNA:   3'- cCCGuaGCu-CCGCGuCU---------------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 2551 0.66 0.688219
Target:  5'- cGGGUgaagaaguaGUCGuacaGCGCGGAcuccaUGGCgGCCAg -3'
miRNA:   3'- -CCCG---------UAGCuc--CGCGUCU-----ACCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 48676 0.66 0.688219
Target:  5'- uGGagAUCGucGCGCAGAUccgGGgCGCCAa -3'
miRNA:   3'- cCCg-UAGCucCGCGUCUA---CCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 53891 0.66 0.688219
Target:  5'- aGGCGUCGGGGCggccccgcugGCGG-UGGagaCGCUg -3'
miRNA:   3'- cCCGUAGCUCCG----------CGUCuACCg--GCGGu -5'
25517 3' -60.6 NC_005337.1 + 8123 0.66 0.688219
Target:  5'- cGGCuaucagcgaGUCGGGGaCGCcgGGcAUGGCCGCg- -3'
miRNA:   3'- cCCG---------UAGCUCC-GCG--UC-UACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 59334 0.66 0.688219
Target:  5'- cGGGUAcuUCGAGGaCGaccacuGGUgcgcGGCCGCCu -3'
miRNA:   3'- -CCCGU--AGCUCC-GCgu----CUA----CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 56928 0.66 0.688219
Target:  5'- cGGCucCGA-GCGCGGA-GGCgGCCAu -3'
miRNA:   3'- cCCGuaGCUcCGCGUCUaCCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 31288 0.66 0.688219
Target:  5'- cGGGCAcgucCGAGGgGCAGAaguacccguacUGGCUGg-- -3'
miRNA:   3'- -CCCGUa---GCUCCgCGUCU-----------ACCGGCggu -5'
25517 3' -60.6 NC_005337.1 + 105424 0.66 0.688219
Target:  5'- -cGcCGUCGGGuGCaucGCGGAguacaugcUGGCCGCCAu -3'
miRNA:   3'- ccC-GUAGCUC-CG---CGUCU--------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 55931 0.66 0.688219
Target:  5'- cGGCAUCcugGAGGa-CGGAcgcgUGGUCGCCGc -3'
miRNA:   3'- cCCGUAG---CUCCgcGUCU----ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 58387 0.66 0.688219
Target:  5'- --aCGUCGgcGGGCGCacguucucGGA-GGCCGCCAc -3'
miRNA:   3'- cccGUAGC--UCCGCG--------UCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 1319 0.66 0.678279
Target:  5'- cGGcGCAg-GAGGUccagcgcgcuGCAGAgcgGGUCGCCGa -3'
miRNA:   3'- -CC-CGUagCUCCG----------CGUCUa--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 101240 0.66 0.678279
Target:  5'- uGGGcCAUCGA-GCGC-GAUGaccuGCCGCUg -3'
miRNA:   3'- -CCC-GUAGCUcCGCGuCUAC----CGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 30265 0.66 0.668301
Target:  5'- cGGGCAggCGguccacGGcGCGCAGGUGaG-CGCCAg -3'
miRNA:   3'- -CCCGUa-GC------UC-CGCGUCUAC-CgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 63687 0.66 0.668301
Target:  5'- cGGCAUgGGGGCGCGGGc-GCUGUUc -3'
miRNA:   3'- cCCGUAgCUCCGCGUCUacCGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.