miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 61094 0.66 0.866004
Target:  5'- -gGCGaCGAgGCGGUGGUaGUGCgcguugagcUCCu -3'
miRNA:   3'- caCGC-GCUgCGCCGCUAgCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 66000 0.66 0.866004
Target:  5'- cGUGCGUccCGUgGGCGAgcgCGUGUgggCCa -3'
miRNA:   3'- -CACGCGcuGCG-CCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 56206 0.66 0.866004
Target:  5'- -cGCGCuaccugcagGACGUGGCGGaggggcggaUCGUGC--CCa -3'
miRNA:   3'- caCGCG---------CUGCGCCGCU---------AGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 67281 0.66 0.866004
Target:  5'- -aGCGCGACuugaGCcccgcguugaGGCGGUUGUaGCggUCCa -3'
miRNA:   3'- caCGCGCUG----CG----------CCGCUAGCA-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 53854 0.66 0.866004
Target:  5'- cUGCGCGcCGCGGaCGGcUCcUGCUgguUCUg -3'
miRNA:   3'- cACGCGCuGCGCC-GCU-AGcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 70360 0.66 0.861499
Target:  5'- gGUGCGcCGcCGCacGUGGUCGcguccguagaaguacUGCUUCCg -3'
miRNA:   3'- -CACGC-GCuGCGc-CGCUAGC---------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 92395 0.66 0.858456
Target:  5'- -gGaCGCGACGuCGGgGA-CGUGCUggggCUc -3'
miRNA:   3'- caC-GCGCUGC-GCCgCUaGCACGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 126959 0.66 0.858456
Target:  5'- -cGCGCGACGUGuGCGGguacaCGccacugcacUGCUacgUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCUa----GC---------ACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 108209 0.66 0.858456
Target:  5'- -cGCGCuacauUGCGGUGG-CGUGCgagCCg -3'
miRNA:   3'- caCGCGcu---GCGCCGCUaGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 52053 0.66 0.858456
Target:  5'- cUGCaCGGCGgaGGCGGgccgCGUGCUguaCCu -3'
miRNA:   3'- cACGcGCUGCg-CCGCUa---GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 39228 0.66 0.858456
Target:  5'- cGUGCGCGacaacGCGCaGGCGuUCcUGCccgCCg -3'
miRNA:   3'- -CACGCGC-----UGCG-CCGCuAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 41631 0.66 0.858456
Target:  5'- -gGUGCGACGCccGGCGucucCGUGgaUCg -3'
miRNA:   3'- caCGCGCUGCG--CCGCua--GCACgaAGg -5'
25520 5' -57.2 NC_005337.1 + 39939 0.66 0.858456
Target:  5'- cGUGCGCGGCG-GGCGccUCGcGCg--- -3'
miRNA:   3'- -CACGCGCUGCgCCGCu-AGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 29223 0.66 0.858456
Target:  5'- -aGCGCcGCGCGGCcGggCGUcGCcugCCg -3'
miRNA:   3'- caCGCGcUGCGCCG-CuaGCA-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 50409 0.66 0.856922
Target:  5'- -cGCGCGucggugacggaGCGGCGGgc--GCUUCCg -3'
miRNA:   3'- caCGCGCug---------CGCCGCUagcaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 27925 0.66 0.850706
Target:  5'- -cGCGCGAUcUGGaCGGucauuucaUCGUGCUgcgCCg -3'
miRNA:   3'- caCGCGCUGcGCC-GCU--------AGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 58243 0.66 0.850706
Target:  5'- -aGCGCaaguccGGCGCGGCGGUC----UUCCg -3'
miRNA:   3'- caCGCG------CUGCGCCGCUAGcacgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 44519 0.66 0.850706
Target:  5'- -cGCGCu-CGCGGCGGagcuccUCG-GCUaCCg -3'
miRNA:   3'- caCGCGcuGCGCCGCU------AGCaCGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.