miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 132046 0.66 0.891911
Target:  5'- ---cUCGCGCGGuuccuGCGCGcGCUcGCGGCc -3'
miRNA:   3'- accuAGCGCGCC-----UGUGCuCGA-UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 1075 0.66 0.891911
Target:  5'- cGGAcUGCG-GGACggaGCGGGCUAcagcCGGCg -3'
miRNA:   3'- aCCUaGCGCgCCUG---UGCUCGAU----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 11546 0.66 0.891911
Target:  5'- -aGGUCGUccGCGGGCACG---UGCGACa -3'
miRNA:   3'- acCUAGCG--CGCCUGUGCucgAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 1075 0.66 0.891911
Target:  5'- cGGAcUGCG-GGACggaGCGGGCUAcagcCGGCg -3'
miRNA:   3'- aCCUaGCGCgCCUG---UGCUCGAU----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 1634 0.66 0.891911
Target:  5'- cGGAggucgaugCGCGCGcccgcGGCgACGAGCUugGcCg -3'
miRNA:   3'- aCCUa-------GCGCGC-----CUG-UGCUCGAugCuG- -5'
25525 3' -56.3 NC_005337.1 + 2096 0.66 0.889886
Target:  5'- cGGcgCGCGCcgcgagcccggucaGGcACGCGuGCaGCGGCg -3'
miRNA:   3'- aCCuaGCGCG--------------CC-UGUGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 16079 0.66 0.889886
Target:  5'- cGGcucCGCGCccaccGGCGCGAGCUcgaacggguccgccGCGGCg -3'
miRNA:   3'- aCCua-GCGCGc----CUGUGCUCGA--------------UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 9355 0.66 0.885083
Target:  5'- cGcGUCGCcUGGACGCGcGCUGCG-Cg -3'
miRNA:   3'- aCcUAGCGcGCCUGUGCuCGAUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 108726 0.66 0.885083
Target:  5'- gGGGUCG-GCGGACAUcGGauucucGCGGCg -3'
miRNA:   3'- aCCUAGCgCGCCUGUGcUCga----UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 6050 0.66 0.885083
Target:  5'- gUGGAUgucCGCgcccGCGGcCACGAGCgGCGcCa -3'
miRNA:   3'- -ACCUA---GCG----CGCCuGUGCUCGaUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 115434 0.66 0.885083
Target:  5'- cGGcgCGUGCuGGCGauaGAGCcggcgUACGACg -3'
miRNA:   3'- aCCuaGCGCGcCUGUg--CUCG-----AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 18909 0.66 0.885083
Target:  5'- cUGGAgCGuCGCGGGCuuGAGC-GCGuACc -3'
miRNA:   3'- -ACCUaGC-GCGCCUGugCUCGaUGC-UG- -5'
25525 3' -56.3 NC_005337.1 + 96093 0.66 0.885083
Target:  5'- cGGggCaCGCGGGCGCG-GCggAgGACa -3'
miRNA:   3'- aCCuaGcGCGCCUGUGCuCGa-UgCUG- -5'
25525 3' -56.3 NC_005337.1 + 13791 0.66 0.885083
Target:  5'- gGGcGUCGC-CGGACACGuGg-GCGAUg -3'
miRNA:   3'- aCC-UAGCGcGCCUGUGCuCgaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 31627 0.66 0.878031
Target:  5'- cUGcAUgGCGCGGGCGaagauccgGAGCUugaGCGACa -3'
miRNA:   3'- -ACcUAgCGCGCCUGUg-------CUCGA---UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 17197 0.66 0.878031
Target:  5'- -----aGCGCGGcCAUGAGCUGC-ACg -3'
miRNA:   3'- accuagCGCGCCuGUGCUCGAUGcUG- -5'
25525 3' -56.3 NC_005337.1 + 42537 0.66 0.878031
Target:  5'- -cGcgCGCGUGGcCGgGGGCUACGuGCg -3'
miRNA:   3'- acCuaGCGCGCCuGUgCUCGAUGC-UG- -5'
25525 3' -56.3 NC_005337.1 + 118112 0.66 0.878031
Target:  5'- gUGGAgcaaaCGCGG-CGCGAGCgcuacuuCGACg -3'
miRNA:   3'- -ACCUagc--GCGCCuGUGCUCGau-----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 130652 0.66 0.878031
Target:  5'- cGGAcgugCGCGCGaGGgACGu-CUACGGCg -3'
miRNA:   3'- aCCUa---GCGCGC-CUgUGCucGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 132247 0.66 0.878031
Target:  5'- cGGAUCGcCGUGGcCAaaGAGCUG-GGCa -3'
miRNA:   3'- aCCUAGC-GCGCCuGUg-CUCGAUgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.