miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 5' -61 NC_005337.1 + 920 0.66 0.699
Target:  5'- gCGCgGCGgcggcggCGaGGCG-GCGGAGcgCg -3'
miRNA:   3'- aGCGgCGCaa-----GC-CCGCgCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 29224 0.66 0.699
Target:  5'- gCGCCGCGcggcCGGGCGuCGCcugccGGUCg -3'
miRNA:   3'- aGCGGCGCaa--GCCCGC-GCGccu--CUAG- -5'
25525 5' -61 NC_005337.1 + 86781 0.66 0.699
Target:  5'- gCGuCCGCa--CGGGCG-GCGGcAGGUCc -3'
miRNA:   3'- aGC-GGCGcaaGCCCGCgCGCC-UCUAG- -5'
25525 5' -61 NC_005337.1 + 59736 0.66 0.699
Target:  5'- gCGCCGCGcggCGGaGCGCGUcuccGcGAGcUCg -3'
miRNA:   3'- aGCGGCGCaa-GCC-CGCGCG----C-CUCuAG- -5'
25525 5' -61 NC_005337.1 + 66627 0.66 0.699
Target:  5'- aCGCCu--UUCGGGCGgGCGGuGGg- -3'
miRNA:   3'- aGCGGcgcAAGCCCGCgCGCCuCUag -5'
25525 5' -61 NC_005337.1 + 47316 0.66 0.699
Target:  5'- gCGUgGUcauGUUCGaGGCGCGCGu-GGUCa -3'
miRNA:   3'- aGCGgCG---CAAGC-CCGCGCGCcuCUAG- -5'
25525 5' -61 NC_005337.1 + 920 0.66 0.699
Target:  5'- gCGCgGCGgcggcggCGaGGCG-GCGGAGcgCg -3'
miRNA:   3'- aGCGgCGCaa-----GC-CCGCgCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 55263 0.66 0.699
Target:  5'- uUCGUCGCucUC-GGUGCGC-GAGGUCg -3'
miRNA:   3'- -AGCGGCGcaAGcCCGCGCGcCUCUAG- -5'
25525 5' -61 NC_005337.1 + 128216 0.66 0.699
Target:  5'- gCGCCGC--UCGuGGCcgcggGCGCGGAcAUCc -3'
miRNA:   3'- aGCGGCGcaAGC-CCG-----CGCGCCUcUAG- -5'
25525 5' -61 NC_005337.1 + 75185 0.66 0.699
Target:  5'- cUCGCgCGCGUccgCGGGC-CGC-GAGAc- -3'
miRNA:   3'- -AGCG-GCGCAa--GCCCGcGCGcCUCUag -5'
25525 5' -61 NC_005337.1 + 98881 0.66 0.699
Target:  5'- gCGCCGCGcgcgCGGacuGCGCGCucgagcccGGGGAg- -3'
miRNA:   3'- aGCGGCGCaa--GCC---CGCGCG--------CCUCUag -5'
25525 5' -61 NC_005337.1 + 52008 0.66 0.699
Target:  5'- aCGCCGUGacggaCGGccGCGCGCGcGcGGUCa -3'
miRNA:   3'- aGCGGCGCaa---GCC--CGCGCGC-CuCUAG- -5'
25525 5' -61 NC_005337.1 + 109472 0.66 0.689223
Target:  5'- gUGCgCGCGU--GGGCGCGCuuccGGAUCu -3'
miRNA:   3'- aGCG-GCGCAagCCCGCGCGcc--UCUAG- -5'
25525 5' -61 NC_005337.1 + 36496 0.66 0.689223
Target:  5'- -gGCCGCGgcCGcGGCGCucgGCGcGAcGAUCc -3'
miRNA:   3'- agCGGCGCaaGC-CCGCG---CGC-CU-CUAG- -5'
25525 5' -61 NC_005337.1 + 83145 0.66 0.689223
Target:  5'- uUCGCCuGCucgUCGGuGCGCucGCGGuAGAUg -3'
miRNA:   3'- -AGCGG-CGca-AGCC-CGCG--CGCC-UCUAg -5'
25525 5' -61 NC_005337.1 + 24048 0.66 0.689223
Target:  5'- -aGCUGUGcUCGGGCGaCGCGGc---- -3'
miRNA:   3'- agCGGCGCaAGCCCGC-GCGCCucuag -5'
25525 5' -61 NC_005337.1 + 127942 0.66 0.689223
Target:  5'- aCGCgGUGcgCGaGuGCGagGCGGAGAUCc -3'
miRNA:   3'- aGCGgCGCaaGC-C-CGCg-CGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 44650 0.66 0.689223
Target:  5'- gCGCCGCag-CGGGCGCuacGUGGGcGAc- -3'
miRNA:   3'- aGCGGCGcaaGCCCGCG---CGCCU-CUag -5'
25525 5' -61 NC_005337.1 + 97787 0.66 0.689223
Target:  5'- gCGCCGCGgcCGcGGCcaggccGUGCGGcAGGUg -3'
miRNA:   3'- aGCGGCGCaaGC-CCG------CGCGCC-UCUAg -5'
25525 5' -61 NC_005337.1 + 133062 0.66 0.683335
Target:  5'- uUCGuCCGCGUaCGcGGCGCcgGUggccgccuggaugcaGGAGAUCc -3'
miRNA:   3'- -AGC-GGCGCAaGC-CCGCG--CG---------------CCUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.