miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 3' -51.5 NC_005337.1 + 65528 0.66 0.986473
Target:  5'- aACCu-GgUGCGCGUGcGCUCGaaagaggugaUCGCg -3'
miRNA:   3'- -UGGuuCgACGCGUACuUGAGCa---------AGCG- -5'
25526 3' -51.5 NC_005337.1 + 42831 0.66 0.986473
Target:  5'- gGCCAAccgcccGCUGCGCGUGGuggugaCGgaCGCc -3'
miRNA:   3'- -UGGUU------CGACGCGUACUuga---GCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 50977 0.66 0.986473
Target:  5'- gACCGGGCgggGCGCc---GCgCGUUCGUc -3'
miRNA:   3'- -UGGUUCGa--CGCGuacuUGaGCAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 64767 0.66 0.986473
Target:  5'- gGCCuccGGCgagGCGUuccUGGACUUcgaGUUCGCc -3'
miRNA:   3'- -UGGu--UCGa--CGCGu--ACUUGAG---CAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 35955 0.66 0.986473
Target:  5'- uGCCGuugcGGCUcGCGCAgcgGAugUCGa-CGCc -3'
miRNA:   3'- -UGGU----UCGA-CGCGUa--CUugAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 110130 0.66 0.986473
Target:  5'- aGCCAuGGCUGCGUGUGguuGugUUGggaaaggCGCa -3'
miRNA:   3'- -UGGU-UCGACGCGUAC---UugAGCaa-----GCG- -5'
25526 3' -51.5 NC_005337.1 + 6116 0.66 0.984698
Target:  5'- gGCCAcgugcagcGGCgUGCGUccGAGCgCGUuUCGCg -3'
miRNA:   3'- -UGGU--------UCG-ACGCGuaCUUGaGCA-AGCG- -5'
25526 3' -51.5 NC_005337.1 + 1180 0.66 0.984698
Target:  5'- cGCUAGGCgGUGCGcGAGCgcggcaCGggCGCg -3'
miRNA:   3'- -UGGUUCGaCGCGUaCUUGa-----GCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 125956 0.66 0.984698
Target:  5'- -gCGGGCgUGgGCGUGAACgcgCGgaacgCGCg -3'
miRNA:   3'- ugGUUCG-ACgCGUACUUGa--GCaa---GCG- -5'
25526 3' -51.5 NC_005337.1 + 41527 0.66 0.984698
Target:  5'- gGCCAuccGCU-CGCG-GAugUCGgUCGCg -3'
miRNA:   3'- -UGGUu--CGAcGCGUaCUugAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 133125 0.66 0.984698
Target:  5'- cAUCGAGCUGUGauccccgcgGAGCUgG-UCGCg -3'
miRNA:   3'- -UGGUUCGACGCgua------CUUGAgCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 12988 0.66 0.982752
Target:  5'- -gCGAGCcgGCGUAUGu-CUCGgUCGUg -3'
miRNA:   3'- ugGUUCGa-CGCGUACuuGAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 111574 0.66 0.982752
Target:  5'- -aCGAGgUGCGaCAUGAACgcgcCGUUCa- -3'
miRNA:   3'- ugGUUCgACGC-GUACUUGa---GCAAGcg -5'
25526 3' -51.5 NC_005337.1 + 100824 0.66 0.982752
Target:  5'- uGCCuGAGaacucGCGCAUGAacgugacuaaGCUCGUggaCGCg -3'
miRNA:   3'- -UGG-UUCga---CGCGUACU----------UGAGCAa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 84869 0.66 0.982752
Target:  5'- cUCAGGg-GCGCAUGuagcuuACUCGgcCGCg -3'
miRNA:   3'- uGGUUCgaCGCGUACu-----UGAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 58874 0.66 0.982547
Target:  5'- cGCCGAGCgcgGUaCGUGAACgugcacuUCGUgguggCGCg -3'
miRNA:   3'- -UGGUUCGa--CGcGUACUUG-------AGCAa----GCG- -5'
25526 3' -51.5 NC_005337.1 + 9330 0.66 0.980624
Target:  5'- aGCCGAGCUGCGUccggagGGACUgcugUCGg -3'
miRNA:   3'- -UGGUUCGACGCGua----CUUGAgca-AGCg -5'
25526 3' -51.5 NC_005337.1 + 60945 0.66 0.980624
Target:  5'- uGCCGcgccGGCaUGCGCAUGGGg-CGcgCGCc -3'
miRNA:   3'- -UGGU----UCG-ACGCGUACUUgaGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 78231 0.66 0.980401
Target:  5'- aGCCGcagcaugucggugGGCaUGCGguUGAGgUCGUUcaCGCg -3'
miRNA:   3'- -UGGU-------------UCG-ACGCguACUUgAGCAA--GCG- -5'
25526 3' -51.5 NC_005337.1 + 105468 0.66 0.979949
Target:  5'- uCCGGGUggucgugcugcgGCGCAUGAGCaagauccgggaguUCGUggCGCa -3'
miRNA:   3'- uGGUUCGa-----------CGCGUACUUG-------------AGCAa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.