miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 14809 0.66 0.877041
Target:  5'- uUCUCGUgCGUgagCGAggacGCC-GUGGugGGCg -3'
miRNA:   3'- -GGAGCG-GCAa--GUU----CGGcCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 92556 0.66 0.877041
Target:  5'- gCUCGCCuccugGUUCuucgaggacGGCCGGcuccGGACGuGCu -3'
miRNA:   3'- gGAGCGG-----CAAGu--------UCGGCCa---CCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 93260 0.66 0.877041
Target:  5'- --aCGCUGUUUAugguggcgaGGCCGGgGGugcguCGGCg -3'
miRNA:   3'- ggaGCGGCAAGU---------UCGGCCaCCu----GCCG- -5'
25529 5' -57.4 NC_005337.1 + 61063 0.66 0.877041
Target:  5'- uCCg-GCCGauggugUUGAGCCGGUGcagcuCGGCg -3'
miRNA:   3'- -GGagCGGCa-----AGUUCGGCCACcu---GCCG- -5'
25529 5' -57.4 NC_005337.1 + 29543 0.66 0.877041
Target:  5'- aUCUCGCCGaUCuugaugccGCCGccGcGGCGGCg -3'
miRNA:   3'- -GGAGCGGCaAGuu------CGGCcaC-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 132526 0.66 0.877041
Target:  5'- cCCUgGUCGgUCcugcuGUCGGUGGccGCGGUg -3'
miRNA:   3'- -GGAgCGGCaAGuu---CGGCCACC--UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 78297 0.66 0.877041
Target:  5'- --gCGCCGUacucCAGGCUGG-GGAggUGGCc -3'
miRNA:   3'- ggaGCGGCAa---GUUCGGCCaCCU--GCCG- -5'
25529 5' -57.4 NC_005337.1 + 57522 0.66 0.876334
Target:  5'- gCUUCGUcuccuucaaCGUUCuggucaaggagugGGGCagcgacaugaCGGUGGACGGCg -3'
miRNA:   3'- -GGAGCG---------GCAAG-------------UUCG----------GCCACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 88560 0.66 0.869885
Target:  5'- -aUCGCCacgcuggCGGGCCGGgGGuucCGGCu -3'
miRNA:   3'- ggAGCGGcaa----GUUCGGCCaCCu--GCCG- -5'
25529 5' -57.4 NC_005337.1 + 36525 0.66 0.869885
Target:  5'- uCCUgaaCGCCG--CGGGCguccccggCGGcUGGGCGGCg -3'
miRNA:   3'- -GGA---GCGGCaaGUUCG--------GCC-ACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 1351 0.66 0.869885
Target:  5'- -gUCGCCGa--AGGUgaCGGUccugaGGACGGCg -3'
miRNA:   3'- ggAGCGGCaagUUCG--GCCA-----CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 84712 0.66 0.869885
Target:  5'- cCCggCGCUGgacaaCGAGCUgaaGGUGGugGuGCg -3'
miRNA:   3'- -GGa-GCGGCaa---GUUCGG---CCACCugC-CG- -5'
25529 5' -57.4 NC_005337.1 + 75854 0.66 0.869885
Target:  5'- gUCUCGCCGcUCcggaaGAGCUucGUGG-CGGCc -3'
miRNA:   3'- -GGAGCGGCaAG-----UUCGGc-CACCuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 129579 0.66 0.869159
Target:  5'- cCCUgGCCGUgcugcUCAAGuCCGcgcgagcgaccGUGGAgcucgucCGGCg -3'
miRNA:   3'- -GGAgCGGCA-----AGUUC-GGC-----------CACCU-------GCCG- -5'
25529 5' -57.4 NC_005337.1 + 35691 0.66 0.865493
Target:  5'- cCUUCGaCCGgcuggCGAGCgcgggcuccgucuacCGGUgcguGGACGGCg -3'
miRNA:   3'- -GGAGC-GGCaa---GUUCG---------------GCCA----CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 44464 0.66 0.862524
Target:  5'- gCCUCGCCGagCuggAGGCCaGUucgaGGcGCGGCc -3'
miRNA:   3'- -GGAGCGGCaaG---UUCGGcCA----CC-UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 90571 0.66 0.854962
Target:  5'- -gUCGCCG-UCGucGGCCGGUccgucGuCGGCg -3'
miRNA:   3'- ggAGCGGCaAGU--UCGGCCAc----CuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 59431 0.66 0.854962
Target:  5'- aCCUCGCCGUUCGggacgaacuGGCgcuccaccuccgCGcUGGAgaGGCg -3'
miRNA:   3'- -GGAGCGGCAAGU---------UCG------------GCcACCUg-CCG- -5'
25529 5' -57.4 NC_005337.1 + 125941 0.66 0.854962
Target:  5'- gCCcCGCUGcUCGAGgCGG-GcGugGGCg -3'
miRNA:   3'- -GGaGCGGCaAGUUCgGCCaC-CugCCG- -5'
25529 5' -57.4 NC_005337.1 + 60252 0.66 0.854962
Target:  5'- ---aGCCGgagUCgGAGCCGGagucgGGGCaGGCg -3'
miRNA:   3'- ggagCGGCa--AG-UUCGGCCa----CCUG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.