Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25533 | 5' | -56.7 | NC_005337.1 | + | 111100 | 0.66 | 0.881619 |
Target: 5'- aGGCCGuccAGC-AGCGCcuCCAcgCGGGUCa -3' miRNA: 3'- cCCGGC---UUGcUCGCGu-GGUa-GCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 65764 | 0.66 | 0.881619 |
Target: 5'- -aGCCGAgcGCGGGCGCACCcaCGGc-- -3' miRNA: 3'- ccCGGCU--UGCUCGCGUGGuaGCUcag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 57495 | 0.66 | 0.881619 |
Target: 5'- aGGuGCUGGugGAcaGCAUCAUCGAG-Cg -3' miRNA: 3'- -CC-CGGCUugCUcgCGUGGUAGCUCaG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 84216 | 0.66 | 0.881619 |
Target: 5'- cGGGCUGcuguGCGGGCGCgGCCugCGGG-Ca -3' miRNA: 3'- -CCCGGCu---UGCUCGCG-UGGuaGCUCaG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 39812 | 0.66 | 0.879507 |
Target: 5'- cGGCCGAGCGAcccggagcugcuccGcCGCACgGagGAGUa -3' miRNA: 3'- cCCGGCUUGCU--------------C-GCGUGgUagCUCAg -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 70687 | 0.66 | 0.877375 |
Target: 5'- uGGCCacGGGCGAGUuccucaccggcgaccGCGCCAagGAGUg -3' miRNA: 3'- cCCGG--CUUGCUCG---------------CGUGGUagCUCAg -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 96230 | 0.66 | 0.874502 |
Target: 5'- gGGGCUGAGC--GCGUACCuggaCGuGUCc -3' miRNA: 3'- -CCCGGCUUGcuCGCGUGGua--GCuCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 23357 | 0.66 | 0.874502 |
Target: 5'- uGGGCCucauGAacuACGGGCgGCACCucaaCGuGUCg -3' miRNA: 3'- -CCCGG----CU---UGCUCG-CGUGGua--GCuCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 98991 | 0.66 | 0.874502 |
Target: 5'- gGGGCCGagGugGAGC-CGCCcccCGAGg- -3' miRNA: 3'- -CCCGGC--UugCUCGcGUGGua-GCUCag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 60638 | 0.66 | 0.874502 |
Target: 5'- cGGGcCCGAGC-AGCGUcUCGUCGAagggguacggGUCg -3' miRNA: 3'- -CCC-GGCUUGcUCGCGuGGUAGCU----------CAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 48361 | 0.66 | 0.874502 |
Target: 5'- aGGCCGcgguggugGACGAGaacgucagcCGCGCCuUCGAGcCg -3' miRNA: 3'- cCCGGC--------UUGCUC---------GCGUGGuAGCUCaG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 100259 | 0.66 | 0.86717 |
Target: 5'- gGGcGCCGAGCGGGUGCuccuccugacGCCGcUgGAGa- -3' miRNA: 3'- -CC-CGGCUUGCUCGCG----------UGGU-AgCUCag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 105214 | 0.66 | 0.86717 |
Target: 5'- gGGGCCgcuGAGCu-GCGCGCUcgCGGG-Cg -3' miRNA: 3'- -CCCGG---CUUGcuCGCGUGGuaGCUCaG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 108919 | 0.66 | 0.86717 |
Target: 5'- aGGGCaCcAGCGAGaCGCGCCG-CGAcGUg -3' miRNA: 3'- -CCCG-GcUUGCUC-GCGUGGUaGCU-CAg -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 99639 | 0.66 | 0.86717 |
Target: 5'- cGGGacaCGGACGuGCGCGgCAUCGccgCg -3' miRNA: 3'- -CCCg--GCUUGCuCGCGUgGUAGCucaG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 10828 | 0.66 | 0.86717 |
Target: 5'- cGGGCgGGuCuAGCGCAUCucugugCGGGUCu -3' miRNA: 3'- -CCCGgCUuGcUCGCGUGGua----GCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 130751 | 0.66 | 0.859627 |
Target: 5'- uGGGUCcGACGuGUGCACCGUgGAc-- -3' miRNA: 3'- -CCCGGcUUGCuCGCGUGGUAgCUcag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 46366 | 0.66 | 0.859627 |
Target: 5'- -cGCCG-GCGcaGGCGCGCCAgCGcGUCa -3' miRNA: 3'- ccCGGCuUGC--UCGCGUGGUaGCuCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 128788 | 0.66 | 0.859627 |
Target: 5'- cGGGUccaCGGGCGuGCGCACCGagCG-GUg -3' miRNA: 3'- -CCCG---GCUUGCuCGCGUGGUa-GCuCAg -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 70980 | 0.66 | 0.859627 |
Target: 5'- cGGuGCUGAGCGGGCucuaCAUCGAGa- -3' miRNA: 3'- -CC-CGGCUUGCUCGcgugGUAGCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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