miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 2860 0.66 0.953117
Target:  5'- aCUUgGCCgAUCGGcgccucaccaGCGUggCCGGCGGc -3'
miRNA:   3'- -GAAgCGG-UAGCU----------UGCGuaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 12930 0.66 0.953117
Target:  5'- -gUCGCCGcCGAACuccagGUA-CCGGCGGa -3'
miRNA:   3'- gaAGCGGUaGCUUG-----CGUaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 35784 0.66 0.953117
Target:  5'- --gUGUCAUgaCGGACGCcgCCGGCGc- -3'
miRNA:   3'- gaaGCGGUA--GCUUGCGuaGGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 67472 0.66 0.953117
Target:  5'- --cCGCCgcuucGUCGAGgGCGUCucgCGGCuGGa -3'
miRNA:   3'- gaaGCGG-----UAGCUUgCGUAG---GCCGuCC- -5'
25536 3' -54.3 NC_005337.1 + 18916 0.66 0.953117
Target:  5'- -gUCGCgGgcUUGAGCGCGUaCCcgaacagcaGGCGGGa -3'
miRNA:   3'- gaAGCGgU--AGCUUGCGUA-GG---------CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 12480 0.66 0.953117
Target:  5'- -aUCGCCGUCGAucUGCAUgucaUCGaGCAGc -3'
miRNA:   3'- gaAGCGGUAGCUu-GCGUA----GGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 94043 0.66 0.953117
Target:  5'- -cUUGUCGUCGAACGaCGagguUCCGGgaaCGGGc -3'
miRNA:   3'- gaAGCGGUAGCUUGC-GU----AGGCC---GUCC- -5'
25536 3' -54.3 NC_005337.1 + 26990 0.66 0.953117
Target:  5'- ---gGUC-UCGGACcCGUCCGGCAGc -3'
miRNA:   3'- gaagCGGuAGCUUGcGUAGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 105225 0.66 0.953117
Target:  5'- gCUgcgCGCUcgCGGGCGC--CCGGCucauGGa -3'
miRNA:   3'- -GAa--GCGGuaGCUUGCGuaGGCCGu---CC- -5'
25536 3' -54.3 NC_005337.1 + 876 0.66 0.948966
Target:  5'- ---gGCCGggcggaaGAGCGCG-CCGaGCAGGa -3'
miRNA:   3'- gaagCGGUag-----CUUGCGUaGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 876 0.66 0.948966
Target:  5'- ---gGCCGggcggaaGAGCGCG-CCGaGCAGGa -3'
miRNA:   3'- gaagCGGUag-----CUUGCGUaGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 82911 0.66 0.948966
Target:  5'- --aCGCCGUCGAACaGCuuggugaaGUCUGaCAGGc -3'
miRNA:   3'- gaaGCGGUAGCUUG-CG--------UAGGCcGUCC- -5'
25536 3' -54.3 NC_005337.1 + 67511 0.66 0.948966
Target:  5'- --aCGCCcagCGGcccGCGCGUgCGGCGGu -3'
miRNA:   3'- gaaGCGGua-GCU---UGCGUAgGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 121573 0.66 0.948966
Target:  5'- cCUUCGCCGagcacCGcauguACGCGcgCCGGgAGGa -3'
miRNA:   3'- -GAAGCGGUa----GCu----UGCGUa-GGCCgUCC- -5'
25536 3' -54.3 NC_005337.1 + 132593 0.66 0.948966
Target:  5'- aCUUCGCCAcCGGgcaccgcaacgACGCGg-CGGCGGc -3'
miRNA:   3'- -GAAGCGGUaGCU-----------UGCGUagGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 115892 0.66 0.944578
Target:  5'- --aUGUCGUCGAGCcccguCGUUCGGCAGcGg -3'
miRNA:   3'- gaaGCGGUAGCUUGc----GUAGGCCGUC-C- -5'
25536 3' -54.3 NC_005337.1 + 76244 0.66 0.944578
Target:  5'- --cCGCCGUCGAagaGCGCGgccuggCCGaGCAc- -3'
miRNA:   3'- gaaGCGGUAGCU---UGCGUa-----GGC-CGUcc -5'
25536 3' -54.3 NC_005337.1 + 47649 0.66 0.944578
Target:  5'- gUUCGCUGUgaCGAGCccggcgcccgGCAUgCUGGCGGGc -3'
miRNA:   3'- gAAGCGGUA--GCUUG----------CGUA-GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 122809 0.66 0.944578
Target:  5'- ---gGCCAUCGAccgcagcguGCGCGUCCGcGUg-- -3'
miRNA:   3'- gaagCGGUAGCU---------UGCGUAGGC-CGucc -5'
25536 3' -54.3 NC_005337.1 + 60852 0.66 0.941831
Target:  5'- -gUCGCuCAUgaucuccuggaacucCGAcGCGCGUCCGGCGu- -3'
miRNA:   3'- gaAGCG-GUA---------------GCU-UGCGUAGGCCGUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.