miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 10261 0.66 0.801427
Target:  5'- gGGGCGCCuCCAuCGGcgGCGGCGc-- -3'
miRNA:   3'- -CUCGUGGcGGUcGCCuaCGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 128757 0.66 0.801427
Target:  5'- aGAGCuCCGCCGGCGcgcGAaccugGUAGCAcGGg -3'
miRNA:   3'- -CUCGuGGCGGUCGC---CUa----CGUCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 78279 0.66 0.801427
Target:  5'- uGAGCcCCGCCAGCGaGGUcGCccGCAu-- -3'
miRNA:   3'- -CUCGuGGCGGUCGC-CUA-CGu-CGUucu -5'
25539 3' -57.7 NC_005337.1 + 14837 0.66 0.801427
Target:  5'- uGGGCGuccuuuCCGCCgAGCGG-UGCuggcgcgacgGGCGAGAc -3'
miRNA:   3'- -CUCGU------GGCGG-UCGCCuACG----------UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 82730 0.66 0.801427
Target:  5'- aGGGCuCCG--AGCGGA-GCAGCGAGu -3'
miRNA:   3'- -CUCGuGGCggUCGCCUaCGUCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 10670 0.66 0.798705
Target:  5'- -cGCGCCgGCCGGCGGcggguucuccucgaAgGCGGcCAGGAg -3'
miRNA:   3'- cuCGUGG-CGGUCGCC--------------UaCGUC-GUUCU- -5'
25539 3' -57.7 NC_005337.1 + 32090 0.66 0.792299
Target:  5'- cGGUACCGCgCGG-GGAUGaCGuGCGAGGc -3'
miRNA:   3'- cUCGUGGCG-GUCgCCUAC-GU-CGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 92079 0.66 0.792299
Target:  5'- -uGUACCGgCAGCGGcuggacgcGCAGCuGGAc -3'
miRNA:   3'- cuCGUGGCgGUCGCCua------CGUCGuUCU- -5'
25539 3' -57.7 NC_005337.1 + 105096 0.66 0.792299
Target:  5'- cGGGCGCCGCCgcgucuccggAGCuGGAcgacGCGGCGcuccGGAc -3'
miRNA:   3'- -CUCGUGGCGG----------UCG-CCUa---CGUCGU----UCU- -5'
25539 3' -57.7 NC_005337.1 + 110546 0.66 0.792299
Target:  5'- -uGCuGCCGCUccGCGGcgGCGGuCAGGAu -3'
miRNA:   3'- cuCG-UGGCGGu-CGCCuaCGUC-GUUCU- -5'
25539 3' -57.7 NC_005337.1 + 120210 0.66 0.792299
Target:  5'- cGAGCACCucGCCgaGGCGGA--CAGCAu-- -3'
miRNA:   3'- -CUCGUGG--CGG--UCGCCUacGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 26098 0.66 0.792299
Target:  5'- aAGCGCCGCCGGauGuccaccGCGGCGAu- -3'
miRNA:   3'- cUCGUGGCGGUCgcCua----CGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 123670 0.66 0.792299
Target:  5'- uGGCGCCGCC-GCucccccGCGGCGGGAc -3'
miRNA:   3'- cUCGUGGCGGuCGccua--CGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 57139 0.66 0.783022
Target:  5'- -cGCGCUGCuCGGCGGcgGCAcGCccgucGGAa -3'
miRNA:   3'- cuCGUGGCG-GUCGCCuaCGU-CGu----UCU- -5'
25539 3' -57.7 NC_005337.1 + 99621 0.66 0.783022
Target:  5'- aGAGCACCaGCguGaaGAUG-AGCGAGAc -3'
miRNA:   3'- -CUCGUGG-CGguCgcCUACgUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 52215 0.66 0.783022
Target:  5'- gGAGCGgCGCucCAGCGGGaugaUGCAGaCGGGc -3'
miRNA:   3'- -CUCGUgGCG--GUCGCCU----ACGUC-GUUCu -5'
25539 3' -57.7 NC_005337.1 + 29973 0.66 0.782087
Target:  5'- aGAGCGCCGCCGcgcccucGCGGAccGCccGCGcGAa -3'
miRNA:   3'- -CUCGUGGCGGU-------CGCCUa-CGu-CGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 34373 0.66 0.777389
Target:  5'- gGAGCGCCGCCgcggcgagccagaggAGCGuggcGGUGCuccagGGCAGGc -3'
miRNA:   3'- -CUCGUGGCGG---------------UCGC----CUACG-----UCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 35963 0.66 0.773606
Target:  5'- cGGC-UCGCgCAGCGGAUGUcgacgccggagGGCAGGu -3'
miRNA:   3'- cUCGuGGCG-GUCGCCUACG-----------UCGUUCu -5'
25539 3' -57.7 NC_005337.1 + 1051 0.66 0.773606
Target:  5'- cGGGCGgCgggagGCCGGCGGggGCGgacuGCGGGAc -3'
miRNA:   3'- -CUCGUgG-----CGGUCGCCuaCGU----CGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.