miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 76959 0.65 0.794564
Target:  5'- aCGCGGCGCUugGCC-GCGCGGuuccgagagcgGCGCc -3'
miRNA:   3'- -GCGUUGCGG--CGGaCGUGUCua---------CGCGa -5'
25539 5' -58.2 NC_005337.1 + 124308 0.66 0.787257
Target:  5'- aCGCGGCcuCCGUCgcgGCGCAG--GCGCUc -3'
miRNA:   3'- -GCGUUGc-GGCGGa--CGUGUCuaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 107161 0.66 0.787257
Target:  5'- gCGCGugGCCaagcGgCUGCugGaGAUGcCGCUg -3'
miRNA:   3'- -GCGUugCGG----CgGACGugU-CUAC-GCGA- -5'
25539 5' -58.2 NC_005337.1 + 49086 0.66 0.787257
Target:  5'- -cCAACGCCuCCaucGCGCAGcucGUGCGCg -3'
miRNA:   3'- gcGUUGCGGcGGa--CGUGUC---UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 2984 0.66 0.787257
Target:  5'- gGCGACGaacgCGCCUGCgacugGCGGAcGgGCUc -3'
miRNA:   3'- gCGUUGCg---GCGGACG-----UGUCUaCgCGA- -5'
25539 5' -58.2 NC_005337.1 + 58052 0.66 0.787257
Target:  5'- -uCAACGCCGCgCUGCACAac--CGCa -3'
miRNA:   3'- gcGUUGCGGCG-GACGUGUcuacGCGa -5'
25539 5' -58.2 NC_005337.1 + 2656 0.66 0.787257
Target:  5'- gGCGcCgGCCGCCUccacGCugAG-UGCGCg -3'
miRNA:   3'- gCGUuG-CGGCGGA----CGugUCuACGCGa -5'
25539 5' -58.2 NC_005337.1 + 38374 0.66 0.787257
Target:  5'- cCGCcguCGCCGCgaGCAC-GA-GCGCc -3'
miRNA:   3'- -GCGuu-GCGGCGgaCGUGuCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 29684 0.66 0.787257
Target:  5'- cCGUAugcuCGCCGCCgacgaccGgACGGAcGCGCg -3'
miRNA:   3'- -GCGUu---GCGGCGGa------CgUGUCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 56778 0.66 0.786337
Target:  5'- aCGCGuccgguCGCCGCCaUGCACcgccccgGGAcGCGUc -3'
miRNA:   3'- -GCGUu-----GCGGCGG-ACGUG-------UCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 46348 0.66 0.777996
Target:  5'- cCGcCGGCGUgcacgaagCGCCgGCGCAGgcGCGCc -3'
miRNA:   3'- -GC-GUUGCG--------GCGGaCGUGUCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 88760 0.66 0.777996
Target:  5'- -cCGACGCCGaggacCCggagGCGCAGGUccGCGCg -3'
miRNA:   3'- gcGUUGCGGC-----GGa---CGUGUCUA--CGCGa -5'
25539 5' -58.2 NC_005337.1 + 42480 0.66 0.777996
Target:  5'- gCGCAcCGCCGCCgccguggagcGCGCGGAacUGCUc -3'
miRNA:   3'- -GCGUuGCGGCGGa---------CGUGUCUacGCGA- -5'
25539 5' -58.2 NC_005337.1 + 85396 0.66 0.777996
Target:  5'- gCGUggUcugGCCGCCggGCGgGGAcGCGCa -3'
miRNA:   3'- -GCGuuG---CGGCGGa-CGUgUCUaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 89629 0.66 0.777996
Target:  5'- aCGUAGCGcCCGCUgcgGCGCAcGAUcaggagcaGCGCc -3'
miRNA:   3'- -GCGUUGC-GGCGGa--CGUGU-CUA--------CGCGa -5'
25539 5' -58.2 NC_005337.1 + 121001 0.66 0.777063
Target:  5'- gCGCAuCGCCcucggcaGCCUGCGgCuGGUGUGUg -3'
miRNA:   3'- -GCGUuGCGG-------CGGACGU-GuCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 17257 0.66 0.775192
Target:  5'- gGCAGCGCCcggagcgugGCCUggcGCACguugaagcugucgaGGAUGUGCc -3'
miRNA:   3'- gCGUUGCGG---------CGGA---CGUG--------------UCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 106289 0.66 0.774255
Target:  5'- aCGUAcaGCuGCCGCUUGCACAGcuccagguuccgGUGCUc -3'
miRNA:   3'- -GCGU--UG-CGGCGGACGUGUCua----------CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 60743 0.66 0.768604
Target:  5'- gCGCGGauguacucgagUGCCGCCU-CGCGGGUGCccaGCa -3'
miRNA:   3'- -GCGUU-----------GCGGCGGAcGUGUCUACG---CGa -5'
25539 5' -58.2 NC_005337.1 + 85642 0.66 0.768604
Target:  5'- gCGCGcugGCGuCCGCCgagcacauguucUGCACAGAcaCGCUg -3'
miRNA:   3'- -GCGU---UGC-GGCGG------------ACGUGUCUacGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.