miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 123046 0.66 0.969078
Target:  5'- uGCGCACcgagGUGCACCUgCG-GUACg-- -3'
miRNA:   3'- gCGCGUG----CAUGUGGAaGCgCAUGagc -5'
25579 5' -53.6 NC_005337.1 + 123078 0.66 0.969078
Target:  5'- aGC-CGCGUGCACCgcaCGaUGUACUUc -3'
miRNA:   3'- gCGcGUGCAUGUGGaa-GC-GCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 65908 0.66 0.969078
Target:  5'- gGCGUGCGcUGCuCCUUCGgGcacCUCGg -3'
miRNA:   3'- gCGCGUGC-AUGuGGAAGCgCau-GAGC- -5'
25579 5' -53.6 NC_005337.1 + 86240 0.66 0.969078
Target:  5'- gGCGUugG-GCACCgUCGCGUuGCgcaCGa -3'
miRNA:   3'- gCGCGugCaUGUGGaAGCGCA-UGa--GC- -5'
25579 5' -53.6 NC_005337.1 + 84752 0.66 0.969078
Target:  5'- cCGCGCGC--GCGCgaUgGUGUGCUUGu -3'
miRNA:   3'- -GCGCGUGcaUGUGgaAgCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 127220 0.66 0.969078
Target:  5'- aCGCGCGCaacccCGCCgcccgcccCGaCGUGCUCGg -3'
miRNA:   3'- -GCGCGUGcau--GUGGaa------GC-GCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 57288 0.66 0.969078
Target:  5'- gGCGCGCGcgGCugCggCGCcgcuCUCGg -3'
miRNA:   3'- gCGCGUGCa-UGugGaaGCGcau-GAGC- -5'
25579 5' -53.6 NC_005337.1 + 31840 0.66 0.969078
Target:  5'- cCGCG-AUGaGCGCgUUCaCGUACUCGg -3'
miRNA:   3'- -GCGCgUGCaUGUGgAAGcGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 86605 0.66 0.969078
Target:  5'- gGCGCACGaucGCGCCcUCGCagcaGUGCa-- -3'
miRNA:   3'- gCGCGUGCa--UGUGGaAGCG----CAUGagc -5'
25579 5' -53.6 NC_005337.1 + 109903 0.66 0.969078
Target:  5'- aCGUGCGCGUGgAagaCgugUCGCGUgggcauGCUCu -3'
miRNA:   3'- -GCGCGUGCAUgUg--Ga--AGCGCA------UGAGc -5'
25579 5' -53.6 NC_005337.1 + 102792 0.66 0.969078
Target:  5'- aCGC-CGgGUucaaccACGCCUUCGCGgcgcUGCUCa -3'
miRNA:   3'- -GCGcGUgCA------UGUGGAAGCGC----AUGAGc -5'
25579 5' -53.6 NC_005337.1 + 24422 0.66 0.969078
Target:  5'- gGCuGUGCGUGCACCUcaaguUCGCGcagAC-CGc -3'
miRNA:   3'- gCG-CGUGCAUGUGGA-----AGCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 3395 0.66 0.967222
Target:  5'- aGCGCGCGUGCGCCaUCugguaguaggaGCGguugacguacccgcGCUUGg -3'
miRNA:   3'- gCGCGUGCAUGUGGaAG-----------CGCa-------------UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 80225 0.66 0.967222
Target:  5'- gCGCGCacgcggucggggucgGCGUACAUCUccaGCGgcaggaGCUCGa -3'
miRNA:   3'- -GCGCG---------------UGCAUGUGGAag-CGCa-----UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 12551 0.66 0.965942
Target:  5'- aGUGCACGUGCAgCg--GCGU-CUUGu -3'
miRNA:   3'- gCGCGUGCAUGUgGaagCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 125646 0.66 0.965942
Target:  5'- gCGCGgACGUgaACGCCaaagaCGCGUACg-- -3'
miRNA:   3'- -GCGCgUGCA--UGUGGaa---GCGCAUGagc -5'
25579 5' -53.6 NC_005337.1 + 80181 0.66 0.965942
Target:  5'- aGCGCcCGUacACGCCguccagcucgCGCGU-CUCGu -3'
miRNA:   3'- gCGCGuGCA--UGUGGaa--------GCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 52780 0.66 0.965942
Target:  5'- cCGCGaCGCGUcgugguACGCC---GCGUACUCc -3'
miRNA:   3'- -GCGC-GUGCA------UGUGGaagCGCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 79439 0.66 0.965942
Target:  5'- gGCGCGCGUGCAuguUCUUCaccaUGUACcCGa -3'
miRNA:   3'- gCGCGUGCAUGU---GGAAGc---GCAUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 39385 0.66 0.965942
Target:  5'- gGCGCA-GUGCGCCUuguUCGCGg----- -3'
miRNA:   3'- gCGCGUgCAUGUGGA---AGCGCaugagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.