miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 1963 0.66 0.902864
Target:  5'- cAGCGcccCCUCcGCCGcCGUGCaCGCCGg -3'
miRNA:   3'- cUUGCu--GGAGuUGGC-GUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 32761 0.66 0.902864
Target:  5'- -cACGGCCUcCAGCCGCGcggagcGCUCGCg- -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUa-----CGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 25508 0.66 0.902864
Target:  5'- -cGCGuCUUCAACC-CGUGUuugCCGCCGa -3'
miRNA:   3'- cuUGCuGGAGUUGGcGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 21853 0.66 0.902864
Target:  5'- aGGCGuuCUCGuCCGCGauccagGCCUACCGc -3'
miRNA:   3'- cUUGCugGAGUuGGCGUa-----CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 14984 0.66 0.902864
Target:  5'- cGAACGAgUUCAugCGCA-GCUUggugaGCCGg -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGG-----UGGC- -5'
25638 3' -55.8 NC_005337.1 + 124858 0.66 0.902864
Target:  5'- -cACGuCCUCGuggAUCGCAUG-CCGCCu -3'
miRNA:   3'- cuUGCuGGAGU---UGGCGUACgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 82734 0.66 0.902864
Target:  5'- -cGCGGCCUCcaggcccggcAGCCGCAcGCCgaagagCGCCa -3'
miRNA:   3'- cuUGCUGGAG----------UUGGCGUaCGG------GUGGc -5'
25638 3' -55.8 NC_005337.1 + 76055 0.66 0.902864
Target:  5'- cGGCGGCCUCcuCCaGCucGCCCAUCu -3'
miRNA:   3'- cUUGCUGGAGuuGG-CGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 47353 0.66 0.902864
Target:  5'- cGACGACaacaUCAuCgGCAUGCUcuuCACCGa -3'
miRNA:   3'- cUUGCUGg---AGUuGgCGUACGG---GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 43067 0.66 0.902864
Target:  5'- -cACGACCacgAACUGUcggAUGUCCACCGc -3'
miRNA:   3'- cuUGCUGGag-UUGGCG---UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 12624 0.66 0.902864
Target:  5'- -cACGACCUCGggggucGCCGCGUcGUCgauGCCGu -3'
miRNA:   3'- cuUGCUGGAGU------UGGCGUA-CGGg--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 56182 0.66 0.896387
Target:  5'- ---gGACCUCAGCgCGCGgaacaaGCuCUACCGc -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUa-----CG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 57540 0.66 0.896387
Target:  5'- ---gGGCCUgGACCGCAUGCacgggCUGCUGc -3'
miRNA:   3'- cuugCUGGAgUUGGCGUACG-----GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 117417 0.66 0.896387
Target:  5'- cGugGACUUCGAgaGCGUGUCCAacUCGg -3'
miRNA:   3'- cUugCUGGAGUUggCGUACGGGU--GGC- -5'
25638 3' -55.8 NC_005337.1 + 35455 0.66 0.896387
Target:  5'- -cGCGACCgCGACCGUccaguacgugcGguugGCCCACuCGa -3'
miRNA:   3'- cuUGCUGGaGUUGGCG-----------Ua---CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 15924 0.66 0.896387
Target:  5'- aGAGCGACCgaaGACgGCggGCUUcauGCCGa -3'
miRNA:   3'- -CUUGCUGGag-UUGgCGuaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 51064 0.66 0.896387
Target:  5'- cAACGugCUCAugcccgucgACCGCAUGaCCuCCa -3'
miRNA:   3'- cUUGCugGAGU---------UGGCGUACgGGuGGc -5'
25638 3' -55.8 NC_005337.1 + 65923 0.66 0.896387
Target:  5'- -cGCGAUCgCGACCGCGccGUCCuCCGg -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUa-CGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 39810 0.66 0.896387
Target:  5'- -uGCGGCCgagCGACCcggaGC-UGCuCCGCCGc -3'
miRNA:   3'- cuUGCUGGa--GUUGG----CGuACG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 131571 0.66 0.896387
Target:  5'- cGugGACCUCAAgcCCGacaaCGUGCUCAUCu -3'
miRNA:   3'- cUugCUGGAGUU--GGC----GUACGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.