miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 77895 0.66 0.983491
Target:  5'- aGGCUgcaGUACACGCGCaGCg-CGUGcACUa -3'
miRNA:   3'- -CCGA---CAUGUGCGUGcUGgaGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 93201 0.66 0.983491
Target:  5'- uGGaUGU---CGCACGACCUCcugGACUa -3'
miRNA:   3'- -CCgACAuguGCGUGCUGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 47604 0.66 0.983491
Target:  5'- gGGCgacgccGCGCGCGCGGCCgCGcUGaaaGCCa -3'
miRNA:   3'- -CCGaca---UGUGCGUGCUGGaGU-AC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 117504 0.66 0.983491
Target:  5'- cGGCgacgcgGUGCACGaCAUcaGCCggcgcgcCGUGACCg -3'
miRNA:   3'- -CCGa-----CAUGUGC-GUGc-UGGa------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 129525 0.66 0.983491
Target:  5'- cGCUGcuCGCGCGCGGCgCgagcgucCGUGAUCu -3'
miRNA:   3'- cCGACauGUGCGUGCUG-Ga------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 57041 0.66 0.983491
Target:  5'- cGGCUGcuggGCGCGUACuacGCCgCAgccaGGCCg -3'
miRNA:   3'- -CCGACa---UGUGCGUGc--UGGaGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 115471 0.66 0.983102
Target:  5'- uGGCguacucgcaccgGUGCACGCACGggGCCgug-GACg -3'
miRNA:   3'- -CCGa-----------CAUGUGCGUGC--UGGaguaCUGg -5'
25638 5' -52.4 NC_005337.1 + 50755 0.66 0.981477
Target:  5'- -uUUGUaacGCGCGCAuCGACCUCGcGcCCu -3'
miRNA:   3'- ccGACA---UGUGCGU-GCUGGAGUaCuGG- -5'
25638 5' -52.4 NC_005337.1 + 78512 0.66 0.981477
Target:  5'- aGGgaGUACGcCGcCACGAUUUCGUccuggaugGACCc -3'
miRNA:   3'- -CCgaCAUGU-GC-GUGCUGGAGUA--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 75438 0.66 0.981477
Target:  5'- uGGCUGUugAgcCGCACGGCgCgCccGACg -3'
miRNA:   3'- -CCGACAugU--GCGUGCUG-GaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 1184 0.66 0.981477
Target:  5'- aGGCgGUGCGCgaGCGCGGCaCgggcgcgCAUuucGACCa -3'
miRNA:   3'- -CCGaCAUGUG--CGUGCUG-Ga------GUA---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 35262 0.66 0.981477
Target:  5'- uGGCUGgucgACagggaGCGCGCGAaCUCcacGGCCu -3'
miRNA:   3'- -CCGACa---UG-----UGCGUGCUgGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 58009 0.66 0.981477
Target:  5'- uGCUGcGCcCGgGCGugCUCGgccaGGCCg -3'
miRNA:   3'- cCGACaUGuGCgUGCugGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 73173 0.66 0.981477
Target:  5'- aGCUcaACGCGCACuaccaccGCCUCGUcGCCg -3'
miRNA:   3'- cCGAcaUGUGCGUGc------UGGAGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 12545 0.66 0.981477
Target:  5'- uGGCcgaGUGCACGUgcaGCGGCgUCuUGuCCg -3'
miRNA:   3'- -CCGa--CAUGUGCG---UGCUGgAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 116712 0.66 0.981477
Target:  5'- uGGCgcgGCACaaGCAcucCGACCUCGUGgACg -3'
miRNA:   3'- -CCGacaUGUG--CGU---GCUGGAGUAC-UGg -5'
25638 5' -52.4 NC_005337.1 + 126424 0.66 0.981477
Target:  5'- cGGCgcgcgACgGCGCGCGugCgCGUGuACCa -3'
miRNA:   3'- -CCGaca--UG-UGCGUGCugGaGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 125986 0.66 0.981477
Target:  5'- cGGCUGcagaccccgcUGCACGuCGCGGCCgCGUucaACCc -3'
miRNA:   3'- -CCGAC----------AUGUGC-GUGCUGGaGUAc--UGG- -5'
25638 5' -52.4 NC_005337.1 + 67878 0.66 0.981477
Target:  5'- aGGUUGUcgagGCGCaGCGCGugCUCgaagcgGUGgaGCCg -3'
miRNA:   3'- -CCGACA----UGUG-CGUGCugGAG------UAC--UGG- -5'
25638 5' -52.4 NC_005337.1 + 46026 0.66 0.981477
Target:  5'- cGGCgcgccgGCACGCACGACgUCuucGCa -3'
miRNA:   3'- -CCGaca---UGUGCGUGCUGgAGuacUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.