miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 133128 0.66 0.77464
Target:  5'- gCCGGCgcgcuccccgCGGaGCuGguCGCGCGCGUGc -3'
miRNA:   3'- -GGUCGaa--------GCUcCG-CguGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 82119 0.66 0.77464
Target:  5'- -aAGCcgCGcuGGCGCAUgaGCGCGCGa- -3'
miRNA:   3'- ggUCGaaGCu-CCGCGUG--CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 80683 0.66 0.77464
Target:  5'- --cGCUUcCGcGcGCGCAUGUGCGCGa- -3'
miRNA:   3'- gguCGAA-GCuC-CGCGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 133568 0.66 0.77464
Target:  5'- gCGGCcgCG-GGCGUGCGCGCGa--- -3'
miRNA:   3'- gGUCGaaGCuCCGCGUGCGCGCgcac -5'
25675 5' -59.3 NC_005337.1 + 15464 0.66 0.77464
Target:  5'- aCUGGCUggccacCGAcGGCGCGCGCG-GCa-- -3'
miRNA:   3'- -GGUCGAa-----GCU-CCGCGUGCGCgCGcac -5'
25675 5' -59.3 NC_005337.1 + 133568 0.66 0.77464
Target:  5'- gCGGCcgCG-GGCGUGCGCGCGa--- -3'
miRNA:   3'- gGUCGaaGCuCCGCGUGCGCGCgcac -5'
25675 5' -59.3 NC_005337.1 + 56851 0.66 0.773722
Target:  5'- aCGGCUUCGu-GCGCAUGCaccgccaGCGCaUGg -3'
miRNA:   3'- gGUCGAAGCucCGCGUGCG-------CGCGcAC- -5'
25675 5' -59.3 NC_005337.1 + 40507 0.66 0.771884
Target:  5'- uCCGGCgaucgaagaCGAGGUGCggcaugcagccgccGCgGCGCGCGgUGg -3'
miRNA:   3'- -GGUCGaa-------GCUCCGCG--------------UG-CGCGCGC-AC- -5'
25675 5' -59.3 NC_005337.1 + 100671 0.66 0.765413
Target:  5'- aCCAcGCcgCGuucGCGcCGCGCGCGCGg- -3'
miRNA:   3'- -GGU-CGaaGCuc-CGC-GUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 117503 0.66 0.765413
Target:  5'- aCGGCgaCGcGGUGCACgacaucagccgGCGCGcCGUGa -3'
miRNA:   3'- gGUCGaaGCuCCGCGUG-----------CGCGC-GCAC- -5'
25675 5' -59.3 NC_005337.1 + 75601 0.66 0.765413
Target:  5'- -aGGCgUUGaAGGCGuccacgagcUugGCGCGCGUGu -3'
miRNA:   3'- ggUCGaAGC-UCCGC---------GugCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 36614 0.66 0.765413
Target:  5'- gCGGCcUgGAGcGCGCGCGCGaccgaGCGc- -3'
miRNA:   3'- gGUCGaAgCUC-CGCGUGCGCg----CGCac -5'
25675 5' -59.3 NC_005337.1 + 1145 0.66 0.765413
Target:  5'- aCCAGCUccgCGGGGaGCGCGC-CgGCGg- -3'
miRNA:   3'- -GGUCGAa--GCUCCgCGUGCGcG-CGCac -5'
25675 5' -59.3 NC_005337.1 + 95810 0.66 0.765413
Target:  5'- cCCGGCgcgcacCGcaugaAGGCGUACGCcucGgGCGUGa -3'
miRNA:   3'- -GGUCGaa----GC-----UCCGCGUGCG---CgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 1632 0.66 0.765413
Target:  5'- aUCGGaggUCGAuGCGCGCGCcCGCGg- -3'
miRNA:   3'- -GGUCga-AGCUcCGCGUGCGcGCGCac -5'
25675 5' -59.3 NC_005337.1 + 97911 0.66 0.765413
Target:  5'- uCCAGCca-GGGGCcgccGCcCGUGgGCGUGa -3'
miRNA:   3'- -GGUCGaagCUCCG----CGuGCGCgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 68556 0.66 0.765413
Target:  5'- aCGGCgcCGGGcGCGCcccacCGCGUGCGg- -3'
miRNA:   3'- gGUCGaaGCUC-CGCGu----GCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 53974 0.66 0.765413
Target:  5'- uCUAGCUUgGAccCGCACGCGUuuGUGa -3'
miRNA:   3'- -GGUCGAAgCUccGCGUGCGCGcgCAC- -5'
25675 5' -59.3 NC_005337.1 + 24277 0.66 0.765413
Target:  5'- gUCAGCUggccGGCGCucACGCaGgGCGUGg -3'
miRNA:   3'- -GGUCGAagcuCCGCG--UGCG-CgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 1107 0.66 0.764483
Target:  5'- gCAGCgccgccgcCGGGaGCagccgcaGCACGCGCGCGa- -3'
miRNA:   3'- gGUCGaa------GCUC-CG-------CGUGCGCGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.