miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 118755 0.66 0.498979
Target:  5'- uGCGCUGCuGCUGCGCgacguccuagaugacGCCgGCGGc- -3'
miRNA:   3'- gUGCGGCGcCGACGCG---------------UGGgCGUCca -5'
25684 3' -64.6 NC_005337.1 + 53856 0.66 0.495288
Target:  5'- gCGCGCCGCGGacgGCu--CCUGCuGGUu -3'
miRNA:   3'- -GUGCGGCGCCga-CGcguGGGCGuCCA- -5'
25684 3' -64.6 NC_005337.1 + 11519 0.66 0.495288
Target:  5'- uGCGCCG-GGCaGCGCAggguggCCGcCAGGUc -3'
miRNA:   3'- gUGCGGCgCCGaCGCGUg-----GGC-GUCCA- -5'
25684 3' -64.6 NC_005337.1 + 57084 0.66 0.495288
Target:  5'- aGCGcCCGCuGUUcGC-CAUCCGCGGGUg -3'
miRNA:   3'- gUGC-GGCGcCGA-CGcGUGGGCGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 132100 0.66 0.495288
Target:  5'- uGCGCCGUGcGCgucgGCGCcguGCgCgGCAGGc -3'
miRNA:   3'- gUGCGGCGC-CGa---CGCG---UG-GgCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 95613 0.66 0.495288
Target:  5'- gCGCGCCaugGCGGCguccguggGCGCggGCCCGCu--- -3'
miRNA:   3'- -GUGCGG---CGCCGa-------CGCG--UGGGCGucca -5'
25684 3' -64.6 NC_005337.1 + 132186 0.66 0.495288
Target:  5'- gGCGCUGgcgcUGGCgucgaGCGCGCUCGCGGa- -3'
miRNA:   3'- gUGCGGC----GCCGa----CGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 2798 0.66 0.495288
Target:  5'- -gUGCCGCauguGCacuagGCGCugCUGCAGGa -3'
miRNA:   3'- guGCGGCGc---CGa----CGCGugGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132433 0.66 0.494368
Target:  5'- --aGCCGCGGCUGCGaccccCUCGCcaccaacguguucGGGa -3'
miRNA:   3'- gugCGGCGCCGACGCgu---GGGCG-------------UCCa -5'
25684 3' -64.6 NC_005337.1 + 48291 0.66 0.486116
Target:  5'- gAC-CCGCGGUcGCGCcUCCGCAugcGGUg -3'
miRNA:   3'- gUGcGGCGCCGaCGCGuGGGCGU---CCA- -5'
25684 3' -64.6 NC_005337.1 + 44324 0.66 0.486116
Target:  5'- -gUGCUGCGGCcGCGCcuuuAUCCGCGcGGc -3'
miRNA:   3'- guGCGGCGCCGaCGCG----UGGGCGU-CCa -5'
25684 3' -64.6 NC_005337.1 + 28244 0.66 0.486116
Target:  5'- aACGCCgucgcGCGGCaccacGCGCACgUGCGuGGUg -3'
miRNA:   3'- gUGCGG-----CGCCGa----CGCGUGgGCGU-CCA- -5'
25684 3' -64.6 NC_005337.1 + 97677 0.66 0.486116
Target:  5'- cCAgGCCGCgGGC-GUGCACgUGguGGa -3'
miRNA:   3'- -GUgCGGCG-CCGaCGCGUGgGCguCCa -5'
25684 3' -64.6 NC_005337.1 + 74703 0.66 0.486116
Target:  5'- gCugGCCGCguGGCUG-GCgaaguacugGCCCGgGGGa -3'
miRNA:   3'- -GugCGGCG--CCGACgCG---------UGGGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 29564 0.66 0.486116
Target:  5'- -cCGCCGCGGCgGCGgCccucguugGCCUGCcGGa -3'
miRNA:   3'- guGCGGCGCCGaCGC-G--------UGGGCGuCCa -5'
25684 3' -64.6 NC_005337.1 + 110954 0.66 0.486116
Target:  5'- gGCGUgCGCaGCUGCGCGgCCGCGu-- -3'
miRNA:   3'- gUGCG-GCGcCGACGCGUgGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 4586 0.66 0.477026
Target:  5'- gGCGCgGCGaCUGCGCguGCUggUGCAGGa -3'
miRNA:   3'- gUGCGgCGCcGACGCG--UGG--GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 94841 0.66 0.477026
Target:  5'- ---aCCGUGGacgaUGCGCACCaGCAGGc -3'
miRNA:   3'- gugcGGCGCCg---ACGCGUGGgCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 62603 0.66 0.477026
Target:  5'- cUAUGUCGCcGCcGUGCACCCGCGcGUu -3'
miRNA:   3'- -GUGCGGCGcCGaCGCGUGGGCGUcCA- -5'
25684 3' -64.6 NC_005337.1 + 54854 0.66 0.477026
Target:  5'- gCGCGCC-CGGCguucaucgagaUGcCGCGCCgcCGCGGGa -3'
miRNA:   3'- -GUGCGGcGCCG-----------AC-GCGUGG--GCGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.