miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 93358 0.66 0.722623
Target:  5'- aCGCGCAGCGCcacCGgGUGAUgaugCUCGa-- -3'
miRNA:   3'- -GCGCGUCGCGc--GCgCACUA----GAGCccc -5'
25687 5' -60.9 NC_005337.1 + 130149 0.66 0.722623
Target:  5'- gCGCGCuGGCGCuCGCGcGcUUUCGGaGGc -3'
miRNA:   3'- -GCGCG-UCGCGcGCGCaCuAGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 110368 0.66 0.722623
Target:  5'- gCGCGCGG-GCGCGCGgcagCgacaggCGGaGGa -3'
miRNA:   3'- -GCGCGUCgCGCGCGCacuaGa-----GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 83300 0.66 0.722623
Target:  5'- aCGCGCGGCGCccCGCccGGUCgaccggcuaGGGGc -3'
miRNA:   3'- -GCGCGUCGCGc-GCGcaCUAGag-------CCCC- -5'
25687 5' -60.9 NC_005337.1 + 42405 0.66 0.721668
Target:  5'- gCGCGCGGCcucgcuguGCGCcggcuucgGCGUGAgCUuccgggccgaguaCGGGGa -3'
miRNA:   3'- -GCGCGUCG--------CGCG--------CGCACUaGA-------------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 95604 0.66 0.721668
Target:  5'- gGUGCAGCaGCGCGCcauggcggcguccGUGggCgCGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGCG-------------CACuaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 128124 0.66 0.716883
Target:  5'- uGCGCGGCuGC-CGCGUGAacgcgcgaaacgcgCUCGGa- -3'
miRNA:   3'- gCGCGUCG-CGcGCGCACUa-------------GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 35557 0.66 0.713042
Target:  5'- aCGCGCAGgGCGcCGCGcGAg--CGGa- -3'
miRNA:   3'- -GCGCGUCgCGC-GCGCaCUagaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 84044 0.66 0.713042
Target:  5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3'
miRNA:   3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 126943 0.66 0.713042
Target:  5'- gGCGCGgacgugaacGCGCGCGaCGUGug--CGGGu -3'
miRNA:   3'- gCGCGU---------CGCGCGC-GCACuagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 31035 0.66 0.713042
Target:  5'- cCGCGCgGGCGCGCaccaGCGgcaGGUUgcagCGGGc -3'
miRNA:   3'- -GCGCG-UCGCGCG----CGCa--CUAGa---GCCCc -5'
25687 5' -60.9 NC_005337.1 + 108548 0.66 0.713042
Target:  5'- uGCGgGGCGCGCGCcUGAcgCU-GGcGGc -3'
miRNA:   3'- gCGCgUCGCGCGCGcACUa-GAgCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 30999 0.66 0.703397
Target:  5'- uCGCGgacCAGCGCGaCGC-UGAUCUCGu-- -3'
miRNA:   3'- -GCGC---GUCGCGC-GCGcACUAGAGCccc -5'
25687 5' -60.9 NC_005337.1 + 56038 0.66 0.703397
Target:  5'- aCGUGCAGgGCGUGCGg---UUCGuGGa -3'
miRNA:   3'- -GCGCGUCgCGCGCGCacuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 84654 0.66 0.703397
Target:  5'- aGCGaCAaCGUcCGCGUGAUCUggucgucggaCGGGGc -3'
miRNA:   3'- gCGC-GUcGCGcGCGCACUAGA----------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 85366 0.66 0.697583
Target:  5'- aCGCGguGCccGUguuuaugaacuccagGUGCGUGGUCUggccgccgggCGGGGa -3'
miRNA:   3'- -GCGCguCG--CG---------------CGCGCACUAGA----------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 7081 0.66 0.693696
Target:  5'- aCGUGCAGCGCGgucaugucguaCGCGUcaGA-CUCGcGGa -3'
miRNA:   3'- -GCGCGUCGCGC-----------GCGCA--CUaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 128024 0.66 0.693696
Target:  5'- gGCGcCAGCGUcaGCGaCGcUGAcUCgcgCGGGGa -3'
miRNA:   3'- gCGC-GUCGCG--CGC-GC-ACU-AGa--GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 131332 0.66 0.693696
Target:  5'- cCGCGCucauGCGCGC-CGUGcgCgUCGGc- -3'
miRNA:   3'- -GCGCGu---CGCGCGcGCACuaG-AGCCcc -5'
25687 5' -60.9 NC_005337.1 + 60200 0.66 0.693696
Target:  5'- gGUGCGGCGCGgGgGggGAcggCUUGGGc -3'
miRNA:   3'- gCGCGUCGCGCgCgCa-CUa--GAGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.