miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 5' -60.2 NC_005337.1 + 97921 0.66 0.728205
Target:  5'- gGCCGCCGCcCGU---GGGCGugaUGGc -3'
miRNA:   3'- gCGGCGGCGuGCAcgaCCCGUug-ACC- -5'
25695 5' -60.2 NC_005337.1 + 1022 0.66 0.728205
Target:  5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3'
miRNA:   3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 109221 0.66 0.728205
Target:  5'- aCGCCGcCCGCACG-GCgc-GCAGCa-- -3'
miRNA:   3'- -GCGGC-GGCGUGCaCGaccCGUUGacc -5'
25695 5' -60.2 NC_005337.1 + 127570 0.66 0.728205
Target:  5'- gGCUGCUGCugGagGCgGGcGCAGCcgUGGn -3'
miRNA:   3'- gCGGCGGCGugCa-CGaCC-CGUUG--ACC- -5'
25695 5' -60.2 NC_005337.1 + 115205 0.66 0.728205
Target:  5'- -cUCGCCGCACcUGCUGuGGCcGC-GGc -3'
miRNA:   3'- gcGGCGGCGUGcACGAC-CCGuUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 1022 0.66 0.728205
Target:  5'- gGCCGUCgaauuucacuuuGCGCGggagGC-GGGCGGCgGGa -3'
miRNA:   3'- gCGGCGG------------CGUGCa---CGaCCCGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 24035 0.66 0.728205
Target:  5'- aCGCgGCucaCGCAgcUGUGCUcGGGCGACgcGGc -3'
miRNA:   3'- -GCGgCG---GCGU--GCACGA-CCCGUUGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 70363 0.66 0.728205
Target:  5'- gCGCCGCCGCACGUGgUc-GCGuccguagaaguACUGc -3'
miRNA:   3'- -GCGGCGGCGUGCACgAccCGU-----------UGACc -5'
25695 5' -60.2 NC_005337.1 + 78231 0.66 0.71854
Target:  5'- aGCCGCaGCAUGUcGgUGGGCAugcGGu -3'
miRNA:   3'- gCGGCGgCGUGCA-CgACCCGUugaCC- -5'
25695 5' -60.2 NC_005337.1 + 73499 0.66 0.71854
Target:  5'- uCGCgGUCGUgaagGCgGUGCUGGGCAcccGCgaGGc -3'
miRNA:   3'- -GCGgCGGCG----UG-CACGACCCGU---UGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 38606 0.66 0.71854
Target:  5'- gCGCaGCgUGgGCGUGCUGGGgAACccGGa -3'
miRNA:   3'- -GCGgCG-GCgUGCACGACCCgUUGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 38897 0.66 0.708805
Target:  5'- gCGCgCGUCGCGCGgccgucGCUGuugccuucGGCGACUcGGc -3'
miRNA:   3'- -GCG-GCGGCGUGCa-----CGAC--------CCGUUGA-CC- -5'
25695 5' -60.2 NC_005337.1 + 119851 0.66 0.708805
Target:  5'- -aCUGCCGCACGUGuCUccuGGCGGCgcGGu -3'
miRNA:   3'- gcGGCGGCGUGCAC-GAc--CCGUUGa-CC- -5'
25695 5' -60.2 NC_005337.1 + 67948 0.66 0.699008
Target:  5'- cCGUCGCCGaagACGa--UGGGCucGCUGGa -3'
miRNA:   3'- -GCGGCGGCg--UGCacgACCCGu-UGACC- -5'
25695 5' -60.2 NC_005337.1 + 960 0.66 0.699008
Target:  5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3'
miRNA:   3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 65337 0.66 0.699008
Target:  5'- uGCCGCCGCGCGgGUacGGGuCGAUg-- -3'
miRNA:   3'- gCGGCGGCGUGCaCGa-CCC-GUUGacc -5'
25695 5' -60.2 NC_005337.1 + 87585 0.66 0.699008
Target:  5'- aGUCGCCGaccucccgGCGccGCUcGGGCGACUGc -3'
miRNA:   3'- gCGGCGGCg-------UGCa-CGA-CCCGUUGACc -5'
25695 5' -60.2 NC_005337.1 + 960 0.66 0.699008
Target:  5'- gGCgGCgGCGgG-GCUGGaGCGGCgGGg -3'
miRNA:   3'- gCGgCGgCGUgCaCGACC-CGUUGaCC- -5'
25695 5' -60.2 NC_005337.1 + 80399 0.66 0.699008
Target:  5'- gGCUGCCGC-UGUGuCUGcucgcgguGGCGucGCUGGu -3'
miRNA:   3'- gCGGCGGCGuGCAC-GAC--------CCGU--UGACC- -5'
25695 5' -60.2 NC_005337.1 + 7040 0.66 0.689157
Target:  5'- gGCCGa-GCACGUcgggGC-GGGCGGCgGGg -3'
miRNA:   3'- gCGGCggCGUGCA----CGaCCCGUUGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.