miRNA display CGI


Results 1 - 20 of 332 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 37948 0.66 0.710765
Target:  5'- cAGCGCCG-CCAGCgggagGCAgGUcaccuucccgGCGCUGGc -3'
miRNA:   3'- -UCGCGGCgGGUCG-----UGUgCG----------UGUGACU- -5'
25711 3' -60 NC_005337.1 + 101355 0.66 0.710765
Target:  5'- gGGCGCCaUCgAGCACACGguguuccccuCGCUGAu -3'
miRNA:   3'- -UCGCGGcGGgUCGUGUGCgu--------GUGACU- -5'
25711 3' -60 NC_005337.1 + 701 0.66 0.710765
Target:  5'- aGGCGaaGCUCGcGCGCACGCcCGCg-- -3'
miRNA:   3'- -UCGCggCGGGU-CGUGUGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 13064 0.66 0.710765
Target:  5'- cGUGUCGCUgCuGCGCGCGgGCGCgGAa -3'
miRNA:   3'- uCGCGGCGG-GuCGUGUGCgUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 84086 0.66 0.710765
Target:  5'- cGCGCCGCagAGCgcggACACGgGCGCg-- -3'
miRNA:   3'- uCGCGGCGggUCG----UGUGCgUGUGacu -5'
25711 3' -60 NC_005337.1 + 34616 0.66 0.710765
Target:  5'- gGGCG-CGCCCAGC-CGCGCgGCGa--- -3'
miRNA:   3'- -UCGCgGCGGGUCGuGUGCG-UGUgacu -5'
25711 3' -60 NC_005337.1 + 90371 0.66 0.710765
Target:  5'- cGCGCgGCCUcuucccGGcCGCGCGUGCACa-- -3'
miRNA:   3'- uCGCGgCGGG------UC-GUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 701 0.66 0.710765
Target:  5'- aGGCGaaGCUCGcGCGCACGCcCGCg-- -3'
miRNA:   3'- -UCGCggCGGGU-CGUGUGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 38334 0.66 0.710765
Target:  5'- cGGCGCCgGgCgAGUACGCGCuGCGCa-- -3'
miRNA:   3'- -UCGCGG-CgGgUCGUGUGCG-UGUGacu -5'
25711 3' -60 NC_005337.1 + 93442 0.66 0.710765
Target:  5'- uGCGUucacgcacucgaCGCCCAGCAgGuccuCGCACACg-- -3'
miRNA:   3'- uCGCG------------GCGGGUCGUgU----GCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 104203 0.66 0.709775
Target:  5'- gAGCGCCGCgCCauccucggggacaAGUucacCACGCGCACc-- -3'
miRNA:   3'- -UCGCGGCG-GG-------------UCGu---GUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 32694 0.66 0.707793
Target:  5'- gAGCGCguaGUCCaugaagugcgcaaaGGgGCGCGaCACGCUGAg -3'
miRNA:   3'- -UCGCGg--CGGG--------------UCgUGUGC-GUGUGACU- -5'
25711 3' -60 NC_005337.1 + 89845 0.66 0.704815
Target:  5'- cGCGCUucacgGCCUcgagcugcuucuccgAGCGCGCGCugGCgaugGAg -3'
miRNA:   3'- uCGCGG-----CGGG---------------UCGUGUGCGugUGa---CU- -5'
25711 3' -60 NC_005337.1 + 83980 0.66 0.704815
Target:  5'- cGGCGCgGgCgGGCACgucugggccugcacgGgGCACACUGGc -3'
miRNA:   3'- -UCGCGgCgGgUCGUG---------------UgCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 69863 0.66 0.700836
Target:  5'- gGGCGCgGgUCCAGCgAC-CGCACGUUGGa -3'
miRNA:   3'- -UCGCGgC-GGGUCG-UGuGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 112750 0.66 0.700836
Target:  5'- -uUGCCGCC--GCGCGCGguCGCUGc -3'
miRNA:   3'- ucGCGGCGGguCGUGUGCguGUGACu -5'
25711 3' -60 NC_005337.1 + 10280 0.66 0.700836
Target:  5'- cGGCG-CGUUCAGCAUgGCGCGCGCa-- -3'
miRNA:   3'- -UCGCgGCGGGUCGUG-UGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 88016 0.66 0.700836
Target:  5'- cGCGCauggucaGCaggaugugCCGGCGCACGUGCACgGGg -3'
miRNA:   3'- uCGCGg------CG--------GGUCGUGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 33388 0.66 0.700836
Target:  5'- gAGCGCCGCCCcgcgaaguAGCuCugGCGgcCGCcgUGGa -3'
miRNA:   3'- -UCGCGGCGGG--------UCGuGugCGU--GUG--ACU- -5'
25711 3' -60 NC_005337.1 + 1869 0.66 0.700836
Target:  5'- cGUGuCCGCuguucaCCAGCGCuAUGCGCACUc- -3'
miRNA:   3'- uCGC-GGCG------GGUCGUG-UGCGUGUGAcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.