miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 24326 0.66 0.964093
Target:  5'- uCGUcgACgGCaGCACGGAGaCCGcGGUGCa -3'
miRNA:   3'- uGCA--UG-CGcUGUGUCUC-GGCaCUACG- -5'
25735 3' -53.6 NC_005337.1 + 11313 0.66 0.964093
Target:  5'- cGCGgGCGuUGGCGCAGAGguCCGUcccAUGCg -3'
miRNA:   3'- -UGCaUGC-GCUGUGUCUC--GGCAc--UACG- -5'
25735 3' -53.6 NC_005337.1 + 120407 0.66 0.964093
Target:  5'- uCGUugGCuccGACACcguccuGAGCCGgcagGcgGCg -3'
miRNA:   3'- uGCAugCG---CUGUGu-----CUCGGCa---CuaCG- -5'
25735 3' -53.6 NC_005337.1 + 20510 0.66 0.964093
Target:  5'- uGCGUGacCGCaccGACAguGAGCaCGUcGAUGUc -3'
miRNA:   3'- -UGCAU--GCG---CUGUguCUCG-GCA-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 10434 0.66 0.964093
Target:  5'- gACGccUGCGCGGCGguGcGCgCGUcGUGCg -3'
miRNA:   3'- -UGC--AUGCGCUGUguCuCG-GCAcUACG- -5'
25735 3' -53.6 NC_005337.1 + 40714 0.66 0.96059
Target:  5'- cACGccUGCGACGCcGAGaCCGUGcagGCc -3'
miRNA:   3'- -UGCauGCGCUGUGuCUC-GGCACua-CG- -5'
25735 3' -53.6 NC_005337.1 + 92964 0.66 0.96059
Target:  5'- cGCGUggACGCcACGCuGgacaacgcgcuGGCCGUGAUGg -3'
miRNA:   3'- -UGCA--UGCGcUGUGuC-----------UCGGCACUACg -5'
25735 3' -53.6 NC_005337.1 + 105995 0.66 0.96059
Target:  5'- gGCGUGggguuCGUGAuCACGGAcaccacgcacguGCgCGUGGUGCc -3'
miRNA:   3'- -UGCAU-----GCGCU-GUGUCU------------CG-GCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 108595 0.66 0.96059
Target:  5'- --cUGCGCGACGCcgccuucgAGGGCCGcGgcGCc -3'
miRNA:   3'- ugcAUGCGCUGUG--------UCUCGGCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 52088 0.66 0.96059
Target:  5'- cCGUGCGCGcC-CGGcGGCCGcgugcaGGUGCg -3'
miRNA:   3'- uGCAUGCGCuGuGUC-UCGGCa-----CUACG- -5'
25735 3' -53.6 NC_005337.1 + 68780 0.66 0.96059
Target:  5'- -aGUACcacccUGACugGGAGCCgGUGGUGg -3'
miRNA:   3'- ugCAUGc----GCUGugUCUCGG-CACUACg -5'
25735 3' -53.6 NC_005337.1 + 80697 0.66 0.96059
Target:  5'- cAUGUGCGCGAggaaguucuccCACGuGAGCUGgu-UGCu -3'
miRNA:   3'- -UGCAUGCGCU-----------GUGU-CUCGGCacuACG- -5'
25735 3' -53.6 NC_005337.1 + 128794 0.66 0.956858
Target:  5'- cACGgGCGUGcGCACcGAGCgGUGccGCa -3'
miRNA:   3'- -UGCaUGCGC-UGUGuCUCGgCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 24059 0.66 0.956858
Target:  5'- gGCG-ACGCGGcCGCGGccgcGGCCGccaucaaGAUGCu -3'
miRNA:   3'- -UGCaUGCGCU-GUGUC----UCGGCa------CUACG- -5'
25735 3' -53.6 NC_005337.1 + 79641 0.66 0.956858
Target:  5'- gAUGUACGCGuGCACGGucacuGCCuccuUGAUGa -3'
miRNA:   3'- -UGCAUGCGC-UGUGUCu----CGGc---ACUACg -5'
25735 3' -53.6 NC_005337.1 + 52467 0.66 0.956858
Target:  5'- cGCGcugagcCGCGGCGCccgcgAGAGCCGgcucAUGCg -3'
miRNA:   3'- -UGCau----GCGCUGUG-----UCUCGGCac--UACG- -5'
25735 3' -53.6 NC_005337.1 + 127933 0.66 0.956858
Target:  5'- -aGUACGCgGACGCGGuGCgCGa-GUGCg -3'
miRNA:   3'- ugCAUGCG-CUGUGUCuCG-GCacUACG- -5'
25735 3' -53.6 NC_005337.1 + 42563 0.66 0.956858
Target:  5'- uGCGgcUGCGGCugGaGGCCGcGggGCu -3'
miRNA:   3'- -UGCauGCGCUGugUcUCGGCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 37390 0.66 0.956858
Target:  5'- ---gGCGCGACACcGuGUCGaaGAUGCa -3'
miRNA:   3'- ugcaUGCGCUGUGuCuCGGCa-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 69611 0.66 0.954507
Target:  5'- uCGUGCGCaucuucgccgacgugGACAUGGAcGCCGcGAUGg -3'
miRNA:   3'- uGCAUGCG---------------CUGUGUCU-CGGCaCUACg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.