miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 6862 0.66 0.917031
Target:  5'- gGUCgccagguggugCAGCAGCGUgCgcccguccaugUCGCgCGCGCg -3'
miRNA:   3'- gUAGaa---------GUCGUCGCAgG-----------AGUG-GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 20099 0.66 0.914677
Target:  5'- cCGUCcgccaUCAGCGagagcGCGUCCUCcACCgagaggucggcgaagGCGCg -3'
miRNA:   3'- -GUAGa----AGUCGU-----CGCAGGAG-UGG---------------CGCG- -5'
25747 3' -55.2 NC_005337.1 + 59631 0.66 0.912284
Target:  5'- gGUCUccccgggCAGCGGCGcCC-CGCCGgGg -3'
miRNA:   3'- gUAGAa------GUCGUCGCaGGaGUGGCgCg -5'
25747 3' -55.2 NC_005337.1 + 68674 0.66 0.912284
Target:  5'- --gCgugCAGCAGCGcgcUCUUgGCCuGCGCg -3'
miRNA:   3'- guaGaa-GUCGUCGC---AGGAgUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 80593 0.66 0.912284
Target:  5'- --gCUUCAGC-GCGgCCUCcuugcggccGCCGaCGCg -3'
miRNA:   3'- guaGAAGUCGuCGCaGGAG---------UGGC-GCG- -5'
25747 3' -55.2 NC_005337.1 + 84130 0.66 0.912284
Target:  5'- aGUCgUUCGGgAGUcuGUCC--ACCGCGCa -3'
miRNA:   3'- gUAG-AAGUCgUCG--CAGGagUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 105772 0.66 0.912284
Target:  5'- -----cCAcGCAGUG-CCgcgCGCCGCGCg -3'
miRNA:   3'- guagaaGU-CGUCGCaGGa--GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 127635 0.66 0.912284
Target:  5'- gAUCUUCuGCucaUGUCCUCcGCCGUGg -3'
miRNA:   3'- gUAGAAGuCGuc-GCAGGAG-UGGCGCg -5'
25747 3' -55.2 NC_005337.1 + 132722 0.66 0.912284
Target:  5'- -cUCUUU-GUGGUGUCUUgAUCGCGCu -3'
miRNA:   3'- guAGAAGuCGUCGCAGGAgUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 78678 0.66 0.912284
Target:  5'- aGUUgaaCuGCAGCGUCCgcaCGCCG-GCg -3'
miRNA:   3'- gUAGaa-GuCGUCGCAGGa--GUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 6229 0.66 0.912284
Target:  5'- -----gCAGCAGCG-UgUCcCCGCGCg -3'
miRNA:   3'- guagaaGUCGUCGCaGgAGuGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 131467 0.66 0.910463
Target:  5'- aCGUCcugCAGCAGCG-CCUagugCAcaugcggcaccgguCCGCGCu -3'
miRNA:   3'- -GUAGaa-GUCGUCGCaGGA----GU--------------GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 58037 0.66 0.90613
Target:  5'- -----aCGGCcguGCGcUCCUCaacGCCGCGCu -3'
miRNA:   3'- guagaaGUCGu--CGC-AGGAG---UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 88434 0.66 0.90613
Target:  5'- -uUCUUCcuGCAGCGccuggacuUCCUCACCuCGa -3'
miRNA:   3'- guAGAAGu-CGUCGC--------AGGAGUGGcGCg -5'
25747 3' -55.2 NC_005337.1 + 96507 0.66 0.90613
Target:  5'- -uUCUUCA--AGC--CCUCGCUGCGCg -3'
miRNA:   3'- guAGAAGUcgUCGcaGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 31382 0.66 0.90613
Target:  5'- -cUCUUCAuGCcGC--CCUCGCgGCGCa -3'
miRNA:   3'- guAGAAGU-CGuCGcaGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 24816 0.66 0.90613
Target:  5'- -----cCAGUuccGCGacuUCCUCGCCGUGCu -3'
miRNA:   3'- guagaaGUCGu--CGC---AGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 118359 0.66 0.90613
Target:  5'- cCGUCUUCGGUcGCucugCCUC-CgGCGCc -3'
miRNA:   3'- -GUAGAAGUCGuCGca--GGAGuGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 73453 0.66 0.90613
Target:  5'- -uUCUUCGcGCGGCGg---UGCCGCGUg -3'
miRNA:   3'- guAGAAGU-CGUCGCaggaGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 53667 0.66 0.90613
Target:  5'- --gCUUC-GCGGCGUgCUCGCUggacccuugaaGCGCc -3'
miRNA:   3'- guaGAAGuCGUCGCAgGAGUGG-----------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.