miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 3' -55.2 NC_005337.1 + 118906 0.66 0.928963
Target:  5'- uCCCAgguaccgagUGCGCGCcuggaaGCGuCGCGCGGgc-GCa -3'
miRNA:   3'- -GGGU---------GCGCGCG------UGC-GUGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 39436 0.66 0.928963
Target:  5'- -gCugGUGCGCAuCGUcCACGGUa--- -3'
miRNA:   3'- ggGugCGCGCGU-GCGuGUGCCAaaug -5'
25783 3' -55.2 NC_005337.1 + 38448 0.66 0.928963
Target:  5'- aUCACGCccgagGCGUACGCcuucAUGCGGUgcGCg -3'
miRNA:   3'- gGGUGCG-----CGCGUGCG----UGUGCCAaaUG- -5'
25783 3' -55.2 NC_005337.1 + 74264 0.66 0.928963
Target:  5'- cUCCGCGCGCcgaaaaauagccGCAUaugGCAcCACGGgg-GCa -3'
miRNA:   3'- -GGGUGCGCG------------CGUG---CGU-GUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 13805 0.66 0.928963
Target:  5'- gUCCGCGCGauccaGCGCGCGCuCGa----- -3'
miRNA:   3'- -GGGUGCGCg----CGUGCGUGuGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 55989 0.66 0.928963
Target:  5'- gCUAUGCGgGCGaccuCGCugGCGGg--GCu -3'
miRNA:   3'- gGGUGCGCgCGU----GCGugUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 35090 0.66 0.928963
Target:  5'- gCCCugGCGCuGCAUGU---CGGUcuucUUGCu -3'
miRNA:   3'- -GGGugCGCG-CGUGCGuguGCCA----AAUG- -5'
25783 3' -55.2 NC_005337.1 + 94829 0.66 0.928963
Target:  5'- cUCCAuCGUGCGCACcgaGCGCGGc---- -3'
miRNA:   3'- -GGGU-GCGCGCGUGcg-UGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 118233 0.66 0.928963
Target:  5'- gCCCGCGCgGCgGCAgGCGCcgcaGCGcGUgUACc -3'
miRNA:   3'- -GGGUGCG-CG-CGUgCGUG----UGC-CAaAUG- -5'
25783 3' -55.2 NC_005337.1 + 2916 0.66 0.928963
Target:  5'- aCCGCGCGCGCuucuCGUGCuCGaaaaagUGCa -3'
miRNA:   3'- gGGUGCGCGCGu---GCGUGuGCcaa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 116210 0.66 0.928963
Target:  5'- gCCAgCGCGUGUGCGC-C-CaGUUUGCg -3'
miRNA:   3'- gGGU-GCGCGCGUGCGuGuGcCAAAUG- -5'
25783 3' -55.2 NC_005337.1 + 89769 0.66 0.923579
Target:  5'- gCCGCGaGCGCGaguUGCGCGuCGGUgacGCg -3'
miRNA:   3'- gGGUGCgCGCGU---GCGUGU-GCCAaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 109396 0.66 0.923579
Target:  5'- gUCugGCGUGC-CGUccacagACACGGcgUGCg -3'
miRNA:   3'- gGGugCGCGCGuGCG------UGUGCCaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 89870 0.66 0.923579
Target:  5'- cUCCgaGCGCGCGCugGCgauggagagcGCGCuGUUcACg -3'
miRNA:   3'- -GGG--UGCGCGCGugCG----------UGUGcCAAaUG- -5'
25783 3' -55.2 NC_005337.1 + 133564 0.66 0.923579
Target:  5'- cCCCGCGgcCGCGgGCGUGCGCGcGa---- -3'
miRNA:   3'- -GGGUGC--GCGCgUGCGUGUGC-Caaaug -5'
25783 3' -55.2 NC_005337.1 + 82625 0.66 0.923579
Target:  5'- aCgGCGgGCGCugGCGacCGCGGa---- -3'
miRNA:   3'- gGgUGCgCGCGugCGU--GUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 14421 0.66 0.923579
Target:  5'- gCCGCGCGacgugccgcCGCugGCGC-CGGg---- -3'
miRNA:   3'- gGGUGCGC---------GCGugCGUGuGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 104455 0.66 0.923579
Target:  5'- -gCACGCGCaGCACacacaGUACGCGGa---- -3'
miRNA:   3'- ggGUGCGCG-CGUG-----CGUGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 123837 0.66 0.923579
Target:  5'- aCgACGCGCGCAcCGC-CGCGcag-GCg -3'
miRNA:   3'- gGgUGCGCGCGU-GCGuGUGCcaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 60105 0.66 0.923579
Target:  5'- gCCCGaGCGCGCcuccCGCAgCACGGc---- -3'
miRNA:   3'- -GGGUgCGCGCGu---GCGU-GUGCCaaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.