miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 83023 0.66 0.917364
Target:  5'- cGGUGAcgccguACACGGcggacaccgucaGCaUGCugCUGGGCg -3'
miRNA:   3'- aCCACU------UGUGCC------------CGaACGugGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 29745 0.66 0.917364
Target:  5'- cGGcGGACcaGCGGGCcggGCuCCuCGAACg -3'
miRNA:   3'- aCCaCUUG--UGCCCGaa-CGuGG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 94844 0.66 0.917364
Target:  5'- ---cGAGCGCGGcccgaGCggGCGCCCGcGCg -3'
miRNA:   3'- accaCUUGUGCC-----CGaaCGUGGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 1434 0.66 0.917364
Target:  5'- gUGGUGuAUGCcGGCgaucgUGCACgUGAACg -3'
miRNA:   3'- -ACCACuUGUGcCCGa----ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38505 0.66 0.917364
Target:  5'- aGGUGGccGCcCGGGC--GCGCCUGGuGCa -3'
miRNA:   3'- aCCACU--UGuGCCCGaaCGUGGGCU-UG- -5'
25783 5' -55.1 NC_005337.1 + 77505 0.66 0.917364
Target:  5'- gGGaagaUGAGCuccACGGGCUUGguCgUCGAGCc -3'
miRNA:   3'- aCC----ACUUG---UGCCCGAACguG-GGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 93294 0.66 0.917364
Target:  5'- gUGGcagagcgGGACuGCGuGGCgcUGUACCCGGGCu -3'
miRNA:   3'- -ACCa------CUUG-UGC-CCGa-ACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 95542 0.66 0.911389
Target:  5'- aGGUcgcaguGCGCGGuCUUGUACCCGuuGGCg -3'
miRNA:   3'- aCCAcu----UGUGCCcGAACGUGGGC--UUG- -5'
25783 5' -55.1 NC_005337.1 + 39948 0.66 0.911389
Target:  5'- cGGgcgccucGCGCGGGCgcucgacGCAUUCGAGCg -3'
miRNA:   3'- aCCacu----UGUGCCCGaa-----CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 90544 0.66 0.911389
Target:  5'- cGGUGAuCACGgucuGGCgccgGCugCCGuACa -3'
miRNA:   3'- aCCACUuGUGC----CCGaa--CGugGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 49268 0.66 0.911389
Target:  5'- cUGGUGGACAUcgugcaGGGCgUGaucuCCgCGAACg -3'
miRNA:   3'- -ACCACUUGUG------CCCGaACgu--GG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 96223 0.66 0.911389
Target:  5'- cGGUGGug--GGGCUgagcgcGUACCUGGACg -3'
miRNA:   3'- aCCACUugugCCCGAa-----CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 38645 0.66 0.905167
Target:  5'- aUGGcGA--GCGGGCccGCGCCCacGGACg -3'
miRNA:   3'- -ACCaCUugUGCCCGaaCGUGGG--CUUG- -5'
25783 5' -55.1 NC_005337.1 + 89791 0.66 0.905167
Target:  5'- cGGUG-ACGCGGcc--GCGCCuCGAACu -3'
miRNA:   3'- aCCACuUGUGCCcgaaCGUGG-GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 110523 0.66 0.903894
Target:  5'- gUGGUGAACACGGcGCccaccaggcuguguuUUGCcgugucgaaggucucGCCCuuGAACc -3'
miRNA:   3'- -ACCACUUGUGCC-CG---------------AACG---------------UGGG--CUUG- -5'
25783 5' -55.1 NC_005337.1 + 115136 0.66 0.898702
Target:  5'- -cGUGAGCAuccCGGGCUUcgacCACCUGGAg -3'
miRNA:   3'- acCACUUGU---GCCCGAAc---GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 60623 0.66 0.898702
Target:  5'- -uGUGcGACACGuGCUcGgGCCCGAGCa -3'
miRNA:   3'- acCAC-UUGUGCcCGAaCgUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 40025 0.66 0.898702
Target:  5'- cGGUGGAgaugcuaGCGGGCgucgucgcggUGCG-CCGAACc -3'
miRNA:   3'- aCCACUUg------UGCCCGa---------ACGUgGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 32634 0.66 0.898702
Target:  5'- cGGccuUGGGguCGGGCaacaaaaacUUGUAUCCGAGCg -3'
miRNA:   3'- aCC---ACUUguGCCCG---------AACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 71076 0.66 0.898702
Target:  5'- uUGGUGcGGCGCuuGGGC-UGCuugACCgGAGCg -3'
miRNA:   3'- -ACCAC-UUGUG--CCCGaACG---UGGgCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.