miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 129596 0.66 0.76641
Target:  5'- -aAGUCCGCgcgagcgaccguggaGCuCGUCCGGcGGCUCGUg -3'
miRNA:   3'- gcUCAGGUG---------------CG-GUAGGUCuCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 45522 0.66 0.76641
Target:  5'- cCGGGUCCuCGgCGUCgGGAgccggugcuggagucGGCgCCGCc -3'
miRNA:   3'- -GCUCAGGuGCgGUAGgUCU---------------CCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 8035 0.66 0.762702
Target:  5'- -aGGUCCACgGCCuUgCGGAGGgCCaGCu -3'
miRNA:   3'- gcUCAGGUG-CGGuAgGUCUCCgGG-CG- -5'
25797 3' -59.6 NC_005337.1 + 59043 0.66 0.762702
Target:  5'- cCGAcUUCGCGCCGcuggcggacgacUCCGGGuGGCUgGCg -3'
miRNA:   3'- -GCUcAGGUGCGGU------------AGGUCU-CCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 35648 0.66 0.761772
Target:  5'- gGAGggUCGCGCCgacggcgGUCCcGAGGuCCCGg -3'
miRNA:   3'- gCUCa-GGUGCGG-------UAGGuCUCC-GGGCg -5'
25797 3' -59.6 NC_005337.1 + 113279 0.66 0.761772
Target:  5'- gGAGcaagaacaCCAUGCCcaugaugAUCCAGAcccGGUCCGCc -3'
miRNA:   3'- gCUCa-------GGUGCGG-------UAGGUCU---CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 3225 0.66 0.753355
Target:  5'- --cGUCCGCacCCAgggCCAgGAGGCgCGCg -3'
miRNA:   3'- gcuCAGGUGc-GGUa--GGU-CUCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 67397 0.66 0.753355
Target:  5'- -aGGUCCGCGCCguugccgaaGUCCAc-GGCCaGCa -3'
miRNA:   3'- gcUCAGGUGCGG---------UAGGUcuCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 48495 0.66 0.753355
Target:  5'- -aAGUCUgACGCCGUCguGAaGUCCGUg -3'
miRNA:   3'- gcUCAGG-UGCGGUAGguCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 43900 0.66 0.753355
Target:  5'- --cGUaCCACgGCCAUCuCAGugccGGGCuCCGCu -3'
miRNA:   3'- gcuCA-GGUG-CGGUAG-GUC----UCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 78279 0.66 0.753355
Target:  5'- uGAGcCC-CGCCAgcgaGGucGCCCGCa -3'
miRNA:   3'- gCUCaGGuGCGGUagg-UCucCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 94633 0.66 0.753355
Target:  5'- aCGcGG-CCGCGCCGcugCguGuacauGGCCCGCg -3'
miRNA:   3'- -GC-UCaGGUGCGGUa--GguCu----CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 35664 0.66 0.753355
Target:  5'- uCGAGaagCUGCGCCAggaGGAGG-CCGCc -3'
miRNA:   3'- -GCUCa--GGUGCGGUaggUCUCCgGGCG- -5'
25797 3' -59.6 NC_005337.1 + 37249 0.66 0.753355
Target:  5'- --cGUCCACGUCgcaguugcgguuGUCC--AGGUCCGCg -3'
miRNA:   3'- gcuCAGGUGCGG------------UAGGucUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 109984 0.66 0.753355
Target:  5'- uCGAGcaCCACGCCcugCguGAGcGCCgGCc -3'
miRNA:   3'- -GCUCa-GGUGCGGua-GguCUC-CGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 43895 0.66 0.753355
Target:  5'- uGAuGUgCACGCgCggCCggaAGAGGCCgCGCg -3'
miRNA:   3'- gCU-CAgGUGCG-GuaGG---UCUCCGG-GCG- -5'
25797 3' -59.6 NC_005337.1 + 105847 0.66 0.752415
Target:  5'- gGAGUCCACguucacgcugGCCAUCCGcgacGAGGacaucuucuacuaCCUGUg -3'
miRNA:   3'- gCUCAGGUG----------CGGUAGGU----CUCC-------------GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 95822 0.66 0.743906
Target:  5'- gGGGUCCAUGuCCGg-CAGcAGGCagaaCCGCg -3'
miRNA:   3'- gCUCAGGUGC-GGUagGUC-UCCG----GGCG- -5'
25797 3' -59.6 NC_005337.1 + 115553 0.66 0.743906
Target:  5'- aGAGgcgCCagcGCGCCGcagcUCCucgccGGGGCCCGa -3'
miRNA:   3'- gCUCa--GG---UGCGGU----AGGu----CUCCGGGCg -5'
25797 3' -59.6 NC_005337.1 + 12619 0.66 0.743906
Target:  5'- -aGGUCCACGaCC--UCGGGGGUcgCCGCg -3'
miRNA:   3'- gcUCAGGUGC-GGuaGGUCUCCG--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.