miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 3' -55 NC_005337.1 + 577 0.65 0.939004
Target:  5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5'
25877 3' -55 NC_005337.1 + 28634 0.65 0.939004
Target:  5'- ---gCACGGUccggagCACGAgcccGACGGUGCa -3'
miRNA:   3'- gaagGUGCCG------GUGCUacu-CUGCCACG- -5'
25877 3' -55 NC_005337.1 + 61053 0.65 0.939004
Target:  5'- -cUCCugguggucCGGCCgAUGGuguUGAGcCGGUGCa -3'
miRNA:   3'- gaAGGu-------GCCGG-UGCU---ACUCuGCCACG- -5'
25877 3' -55 NC_005337.1 + 29051 0.65 0.939004
Target:  5'- --gCCACGccGCCAuaUGGUGAG-UGGUGUa -3'
miRNA:   3'- gaaGGUGC--CGGU--GCUACUCuGCCACG- -5'
25877 3' -55 NC_005337.1 + 69274 0.65 0.939004
Target:  5'- gCUUCCACcccGCCGCGcgc-GACGG-GCa -3'
miRNA:   3'- -GAAGGUGc--CGGUGCuacuCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 577 0.65 0.939004
Target:  5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5'
25877 3' -55 NC_005337.1 + 62402 0.65 0.939004
Target:  5'- -gUCCACGGUCGCa---AGcUGGUGCg -3'
miRNA:   3'- gaAGGUGCCGGUGcuacUCuGCCACG- -5'
25877 3' -55 NC_005337.1 + 57270 0.66 0.934105
Target:  5'- ---aCGgGGCCGCGcgGGGcCGGcGCg -3'
miRNA:   3'- gaagGUgCCGGUGCuaCUCuGCCaCG- -5'
25877 3' -55 NC_005337.1 + 118965 0.66 0.934105
Target:  5'- aUUCCACGGgUACGcgGAcACGGa-- -3'
miRNA:   3'- gAAGGUGCCgGUGCuaCUcUGCCacg -5'
25877 3' -55 NC_005337.1 + 15090 0.66 0.934105
Target:  5'- -gUCCAUGGCUgcgGCGGUGuuGCGGc-- -3'
miRNA:   3'- gaAGGUGCCGG---UGCUACucUGCCacg -5'
25877 3' -55 NC_005337.1 + 131402 0.66 0.934105
Target:  5'- --gCCGcCGGCCACGcugGUGAGGCGccgaucgGCc -3'
miRNA:   3'- gaaGGU-GCCGGUGC---UACUCUGCca-----CG- -5'
25877 3' -55 NC_005337.1 + 95012 0.66 0.933601
Target:  5'- ---gCGCGGCCaccgcgaACGgcGGGACGGcggGCa -3'
miRNA:   3'- gaagGUGCCGG-------UGCuaCUCUGCCa--CG- -5'
25877 3' -55 NC_005337.1 + 62641 0.66 0.928963
Target:  5'- -cUCCAUGGUgGCGAaGAGcagGCGGaUGUc -3'
miRNA:   3'- gaAGGUGCCGgUGCUaCUC---UGCC-ACG- -5'
25877 3' -55 NC_005337.1 + 39491 0.66 0.928963
Target:  5'- -gUCUAC-GCCGcCGAUcGAccGGCGGUGCu -3'
miRNA:   3'- gaAGGUGcCGGU-GCUA-CU--CUGCCACG- -5'
25877 3' -55 NC_005337.1 + 35337 0.66 0.928963
Target:  5'- --gCCugGGCCGuguuCGGUGAGucguCGGacgGCu -3'
miRNA:   3'- gaaGGugCCGGU----GCUACUCu---GCCa--CG- -5'
25877 3' -55 NC_005337.1 + 69717 0.66 0.928963
Target:  5'- --gUgGCGGCCACGcgGuccaGGAaGGUGCc -3'
miRNA:   3'- gaaGgUGCCGGUGCuaC----UCUgCCACG- -5'
25877 3' -55 NC_005337.1 + 130173 0.66 0.923578
Target:  5'- -cUCCGC-GCgCGCGGUGAGgACGcUGCu -3'
miRNA:   3'- gaAGGUGcCG-GUGCUACUC-UGCcACG- -5'
25877 3' -55 NC_005337.1 + 6111 0.66 0.923578
Target:  5'- --gUCGCGGCCACG-UGcaGCGGcgUGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuACucUGCC--ACG- -5'
25877 3' -55 NC_005337.1 + 105134 0.66 0.923578
Target:  5'- -cUCCggACGGCCGuCGccGAcAUGGUGCu -3'
miRNA:   3'- gaAGG--UGCCGGU-GCuaCUcUGCCACG- -5'
25877 3' -55 NC_005337.1 + 12711 0.66 0.923578
Target:  5'- -gUCCGCGcgcgcGCCGCGcucGAGGaGGUGCc -3'
miRNA:   3'- gaAGGUGC-----CGGUGCua-CUCUgCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.