miRNA display CGI


Results 1 - 20 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 3' -59.2 NC_005337.1 + 117218 0.66 0.778954
Target:  5'- --aUGCGCaUCCAgcggaacGugCaGaCCGCGCGGa -3'
miRNA:   3'- ugaACGCG-AGGUa------CugG-C-GGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 34441 0.66 0.778954
Target:  5'- gGCUUGuCGg-CCAUGA-CGCUGCGCa- -3'
miRNA:   3'- -UGAAC-GCgaGGUACUgGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 68237 0.66 0.778954
Target:  5'- ---cGgGUUCCGgagcgcGGCCGgCGCGUGGg -3'
miRNA:   3'- ugaaCgCGAGGUa-----CUGGCgGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 94564 0.66 0.778954
Target:  5'- --aUGCGCUUgAUGggcgcgGCCaGCCGCGUGu -3'
miRNA:   3'- ugaACGCGAGgUAC------UGG-CGGCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 18850 0.66 0.778954
Target:  5'- ---aGCGaCUCCcgGACgGCCG-GCGa -3'
miRNA:   3'- ugaaCGC-GAGGuaCUGgCGGCgCGCc -5'
25883 3' -59.2 NC_005337.1 + 66967 0.66 0.778954
Target:  5'- ---aGCGCgCCAUGgaccgcuacaACCGCCucaaCGCGGg -3'
miRNA:   3'- ugaaCGCGaGGUAC----------UGGCGGc---GCGCC- -5'
25883 3' -59.2 NC_005337.1 + 110350 0.66 0.778954
Target:  5'- ---cGCGCgcgCCu--GCCGCgggCGCGCGGg -3'
miRNA:   3'- ugaaCGCGa--GGuacUGGCG---GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 117241 0.66 0.778954
Target:  5'- --aUGcCGCUgCCGUGcGCCuUCGCGCGGc -3'
miRNA:   3'- ugaAC-GCGA-GGUAC-UGGcGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 111374 0.66 0.778954
Target:  5'- cGCUgaagaGCUCgCGguGCCGCuCGCGCGGc -3'
miRNA:   3'- -UGAacg--CGAG-GUacUGGCG-GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 58213 0.66 0.778954
Target:  5'- ----cCGCggCGU-ACCGCCGCGCGGc -3'
miRNA:   3'- ugaacGCGagGUAcUGGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 10226 0.66 0.778954
Target:  5'- ---gGCaGCUCCA--GCCGCggcaggCGCGCGGc -3'
miRNA:   3'- ugaaCG-CGAGGUacUGGCG------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 24972 0.66 0.778954
Target:  5'- uGCguggUGCGCUUCuucGGCUGCaaCGCGCGc -3'
miRNA:   3'- -UGa---ACGCGAGGua-CUGGCG--GCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 13669 0.66 0.778041
Target:  5'- uCUUGCcggccucCUCCAUGAgCGCgaggcagacuaggUGCGCGGu -3'
miRNA:   3'- uGAACGc------GAGGUACUgGCG-------------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 35757 0.66 0.769765
Target:  5'- cGCUggGCGCgaCCggGAUCGUgGCGCGu -3'
miRNA:   3'- -UGAa-CGCGa-GGuaCUGGCGgCGCGCc -5'
25883 3' -59.2 NC_005337.1 + 14416 0.66 0.769765
Target:  5'- uGCUUGcCGCgcgaCGUG-CCGCCGCugGCGc -3'
miRNA:   3'- -UGAAC-GCGag--GUACuGGCGGCG--CGCc -5'
25883 3' -59.2 NC_005337.1 + 63404 0.66 0.769765
Target:  5'- ---cGCGCUggaCAUGGCgCGCucguacagCGCGCGGu -3'
miRNA:   3'- ugaaCGCGAg--GUACUG-GCG--------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 69973 0.66 0.769765
Target:  5'- ---cGCGCaagacgCCGgacgcGACCGCCGUGCa- -3'
miRNA:   3'- ugaaCGCGa-----GGUa----CUGGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 69695 0.66 0.769765
Target:  5'- aGCUUG-GCUCCuucuucGACCGCuuCGCcaGCGGc -3'
miRNA:   3'- -UGAACgCGAGGua----CUGGCG--GCG--CGCC- -5'
25883 3' -59.2 NC_005337.1 + 35708 0.66 0.769765
Target:  5'- aGCgcGgGCUCCGUcuACCGgUGCGUGGa -3'
miRNA:   3'- -UGaaCgCGAGGUAc-UGGCgGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 58299 0.66 0.769765
Target:  5'- -gUUGUuCUCCAgGAacgCGCCGCGCGa -3'
miRNA:   3'- ugAACGcGAGGUaCUg--GCGGCGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.